Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq401 538 4e-148 seq183 129 7e-25 seq1092 105 8e-18 >seq401 Length=384550 Score = 538 bits (596), Expect = 4e-148 Identities = 1206/1791 (67%), Gaps = 50/1791 (3%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 ||||| | || |||||||||| | || || ||||| || || | ||| |||||||| Sbjct 356777 TTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCCA 356836 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| || || | ||||| | | |||||| ||| || | ||| |||| | || Sbjct 356837 GTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGGT 356896 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || || | ||| ||||| | ||| || |||||||| || || || ||||| || || ||| Sbjct 356897 TCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGCC 356956 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATC 62079 |||| || |||| || || ||||||||| | ||||| || || || | || | || Sbjct 356957 ATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATT-TC 357015 Query 62080 TTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCAT-AATCCTA---TTCT 62132 || ||||| || |||| ||||| || ||||| || || ||| || || | Sbjct 357016 TTTTGGAATTCTTTCGATATTTTGAATTGA---ACCAT-TGTTATGAATGATAAGGTTTT 357071 Query 62133 TGATCTCATCATTCCATA-ATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 62191 | || || |||| ||||| || | || || ||||| || | | ||||| | || ||| Sbjct 357072 TCATGTCTTCATCCCATAGATCTGCTTGCG-TTAAATCTTTCAAAAGATGATGGTTCACT 357130 Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 |||||||||||||| ||||| ||||| | || || || ||| | ||||| | Sbjct 357131 ACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAG 357190 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 || ||||||||||| | |||||| || || ||||| || |||||||| || | | ||| Sbjct 357191 GATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAA 357250 Query 62312 CTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCC 62371 || | ||| |||| | | ||||| |||||||||| ||||||||||||| ||| Sbjct 357251 GAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCC 357310 Query 62372 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTAC 62430 | |||| ||| | |||||| |||||| | | | || | Sbjct 357311 GTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTAT-TTTT 357369 Query 62431 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 62490 | | ||| |||| ||||| || || |||| |||||| || || ||||| || || || Sbjct 357370 AAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATA 357429 Query 62491 ATAAATGGTTTCGAAGATCTTCTTATTTAGAT--CTTGCGCTTCCAGGCTATCAAATGGA 62548 |||||| || || || || | | ||||| | |||| || || || ||| ||||| Sbjct 357430 ATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCA--CTTTCATATGGA 357487 Query 62549 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62608 ||| | | || || | || || || |||||||||||||| || || ||||| ||| Sbjct 357488 TAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGT 357547 Query 62609 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62668 ||| | || || ||| ||||||||||| ||||| ||||| | ||| |||||||| || Sbjct 357548 CTCATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTT 357607 Query 62669 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAA---TCAAATCGCCCA 62725 | |||| | |||| ||| || ||||| | || |||| | | | | Sbjct 357608 AAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCT 357667 Query 62726 TCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 62785 || | ||||||||||| | || | ||||| | |||||| || || || |||| | Sbjct 357668 TCATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCAT---CT 357724 Query 62786 TCC---GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 62842 ||| | |||| || || || ||||| ||||| ||||| || || || || | ||| Sbjct 357725 TCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTT 357784 Query 62843 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 62902 |||||||| || ||| ||||||| | || ||||| || || ||||| || ||||| || Sbjct 357785 TGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCT 357844 Query 62903 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-----CTTTATTATAGATTTGT 62957 | || | || || || |||||||| | | | | || ||| ||| | | | Sbjct 357845 ACTTGTGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTA-ACA----T 357899 Query 62958 ATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63017 | |||| ||| ||| ||| || |||||| || || || |||||||| | Sbjct 357900 ACTTCTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAG 357959 Query 63018 CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63077 | || |||||| | | | |||||||| | ||| | | ||| | | |||| | Sbjct 357960 CGAGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTCT 358019 Query 63078 TCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCG 63136 |||| || | |||||||||||||||||| ||| || || ||||||| | ||| || Sbjct 358020 TCATGAATAAATCAGGAATCCAAAGAGC-ATAGAAAAGCTCTCTGGCACGCACTTCTTCT 358078 Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196 || |||||||||||||| || || | || | | |||||||| |||||| ||||| || Sbjct 358079 TTCCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAA 358138 Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256 || || || | | || || | ||| ||||| || ||||| | ||||| || || || Sbjct 358139 TAAATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTG 358198 Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316 || || || || ||||| || | | ||||| || ||||| || || | ||||| Sbjct 358199 TTGTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATAT 358258 Query 63317 CTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63376 |||| | || | ||| | || |||||| ||||| ||||| || || ||| Sbjct 358259 GTTCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATATT 358318 Query 63377 AATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGT 63436 ||||| | | |||| ||||||||||| ||||| ||||| ||||| |||| || | Sbjct 358319 AATGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATT 358378 Query 63437 AGAAAACAGCTAGACATTTGGTGACGACTA---GTTCCCGCATTAAATAAG-GTAGGAGA 63492 | |||||| ||||| | ||| | ||| ||| | || | | | ||| || ||| Sbjct 358379 AAAAAACAAGAAGACA---GCTGAGGTCTAGGTGTTGCTGC-TGAGAAAAGAGTTGGACT 358434 Query 63493 AGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC 63552 || |||||||| |||||||||| | | |||||| |||| || || | ||||| || Sbjct 358435 GGCATGAGTAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTC 358494 Query 63553 CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 | ||| || || | ||| || | ||||||||| || || || || || Sbjct 358495 ATCTCCATGTATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 >seq183 Length=738700 Score = 129 bits (142), Expect = 7e-25 Identities = 163/220 (74%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| || || ||| | ||| ||| || || || || |||||||| || | ||||| Sbjct 171511 CCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTT 171452 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| || ||||| |||||| ||||||||||| || || || ||||| | Sbjct 171451 TCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATG 171392 Query 32803 CAATAAGTCTCTCTCCATAACCGGC-GCTGT-CATG-TATCCACTTTTGAGCCCAATCGG 32859 | | || ||| || ||| | || | | | | || |||||||| |||||||||| | Sbjct 171391 CTACAATTCTTTCACCAAATGTAGCAGATTTGCTTGCTATCCACTGGAGAGCCCAATCTG 171332 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||||||| |||||||| || | ||||||| |||||| || Sbjct 171331 CCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAA 171292 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 32931 TATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAAT 32990 ||||||||||| | || ||||||||| ||||| | ||||| || || || ||||| Sbjct 171070 TATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAG 171011 Query 32991 CCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTT 33050 || ||||| ||||| || || || | ||||| ||| | || | ||| | | |||| Sbjct 171010 CCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTT 170951 Query 33051 TCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33103 ||||| ||||| || || || ||||| || ||||||||||| || || || Sbjct 170950 TCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAA 170898 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 || |||| ||||||||||| || ||||| || || || ||||||||||||||||| | | Sbjct 170685 TTCGATAAGTCCACTTCTTCAACAGTCCAGAAAGAAGCTTCTGCCTTTTTATACATTTGC 170626 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 || || || | |||||||| ||||| |||||||| Sbjct 170625 CAAATATCCGGGTATTGAATAGGAAACATAACAAA 170591 >seq1092 Length=556928 Score = 105 bits (116), Expect = 8e-18 Identities = 244/366 (67%), Gaps = 5/366 (1%) Strand=Plus/Plus Query 155186 ATGACTCCAATTAATCCCATGTTAGCGGAATCGTGTGATTCTGTCAATAAGGCATTTAAA 155245 |||||||| ||| || |||||||| || | ||| | || | | | ||| | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 155246 AAATTTCCATCAGGAATGTTTGCTGAAGTCAAATACGATGGCGAGAGAGTACAAGTTCAT 155305 || | |||| || |||||| ||||| | || || ||||| ||| | || ||||||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 155306 AAAAATAATAACGAGTTTGCCTTCTTTAGTAGAAACATGAAACCAGTACTCTCTTATAAA 155365 ||||| ||| |||||| | ||| | || | || |||||| | || ||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 155366 GTGGATTATCTCAAAGAATACATACCGAAAGCATTTAAAAAAGCTACGTCTATCGTATTG 155425 || || || | ||||| || |||| |||||||| ||||| ||| | ||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 155426 GATTCTGAAATTGTTCTTGTAGACG----AACATAATGTACCGCTCCCGTTTGGAAGTTT 155481 ||| | ||| | | | ||||| | |||| | ||| | |||||||| | ||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGAAA-ACCATTACCGTTTGGCACTTT 531658 Query 155482 AGGTATACACAAAAAGAAAGAATATAAAAACTCTAACATGTGTTTGTTCGTGTTTGACTG 155541 |||| |||| ||| || ||| | |||| | | | | || || | | | |||||||| Sbjct 531659 AGGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTG 531718 Query 155542 TTTGTA 155547 |||||| Sbjct 531719 TTTGTA 531724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633573800900800