Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq326 250 2e-61 seq429 122 8e-23 seq53 120 3e-22 >seq326 Length=503882 Score = 250 bits (276), Expect = 2e-61 Identities = 663/990 (67%), Gaps = 31/990 (3%) Strand=Plus/Minus Query 57185 TTGCAATTTGCTTGTAATCAACCACGCCTTCCTCCCACGTGCCGT-GCACAGGCCCACTT 57243 ||||||||| | ||||||| ||||| || |||| ||| ||||| | ||| ||| || || Sbjct 281429 TTGCAATTTCCCTGTAATCGACCACACCATCCTGCCATGTGCCCTTGCA-AGGTCCTGTT 281371 Query 57244 CCTTTACCCGTGAACGGATTGTTGTCCGTGTAGTCGTGCACACCCGTCCATCCTCGACCG 57303 | | |||||||| ||||| || || || | ||| || || ||||| || || || Sbjct 281370 GCGATCCCCGTGAAAGGATTACCATCTGTATAATTGTGTACTCCGGTCCACCCACGTCCA 281311 Query 57304 TACATGGCCACGCCAACCACTATTTTGTCAGCGG--ACACGTTCTGCGCTAACAAAGTGC 57361 ||||| || || || || || ||||| | | | |||| || | || || | || | Sbjct 281310 TACATTGCAACACCTACGACAATTTTCTTCGGGTTTACACCTT--GAGCCAATAG-GTAC 281254 Query 57362 -GTACAGCATTGTCTGTGGTATATGGTTCGCTAGGGTTCCACAGAGGCGCATAAATGTTG 57420 | ||| | |||||||||||| | ||| | | ||||||| || ||||| | | Sbjct 281253 TGAACACCGAAGTCTGTGGTATAAGTTTCCTTTGAGTTCCACTCGGGAGCATACAGTGCG 281194 Query 57421 GTTTGATAGCCCAAATTTGTG-TTACTCCAGGCACCTTTAAAATCGTACGACATTA--AG 57477 ||||||| | || ||| | | || ||| ||||| ||||| ||||| ||| | | Sbjct 281193 GTTTGAT-GACCTAATGTATCATTGGACCAAGCACCCTTAAAGTCGTAGCTCATAACAAA 281135 Query 57478 AATATGCTGTCGAGATATTTTTGCGCATGATTGTAATCGACAAGTTCGATTTTATCATTA 57537 |||||| ||| | || || |||||| ||||| || |||| || |||||| || Sbjct 281134 AATATG--GTCCATGTAATTCTGCGCAGCTTTGTAGTCTACAACTTGGATTTTGTCCCAT 281077 Query 57538 CCGGCGCCGATGGCTGTTGTGAGCAA-TAGTTTACGATCAGTTTCCAGTTCCAACTCGTC 57596 || || | || |||| ||| | || || | || |||| || |||| Sbjct 281076 CCAGCACTAATAGCTGATGTTAATTCGTACTTCTTGCCCA-TTTCATTGGATAATTCGTT 281018 Query 57597 CAACATTAATCTCAAATCT--TTCAATAGCCGCACGTATGTTTCTCCGTCGCGACCAGGG 57654 | |||| |||| || || |||| || || || ||| || || | || Sbjct 281017 AAGCATT--TCTCGAAGCTCCTTCATTAATAAAACATAGACTTCACCATCCTTA---GGA 280963 Query 57655 TCGCCCAACAAAGGATTAGCACCATTACCACCAGGAAATTCCCAATCAATGTCGACTCCA 57714 | || | || || || || ||||| ||||| |||||||| || ||||| || ||| Sbjct 280962 CCACCAAGTGTCGGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCA 280903 Query 57715 TCAAAAAATTTCCACACTTTGATGTAGTCGCGCACCGATTGCACAAAA-GTGTTGCGAAT 57773 || ||||||||||| || | | |||| || || | | ||| | | | | Sbjct 280902 TCGAAAAATTTCCAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAACGCGCTCTCTTT 280843 Query 57774 AG--TGTCGTCGTGCATGAAAAAGAAGGGATCCGATAAGGTCCAACCACCAATGGATGGC 57831 | |||| ||| | ||| ||||| ||||| | | ||||||||| ||||| || || Sbjct 280842 ACCTTGTCATCG---AAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGA 280786 Query 57832 AATACTTTTAGATGCGGATATGCTTTTTTGACCGCCATCAGTTGACCAAAATTACCTTTG 57891 | | ||||||| || ||||| ||| | | ||||| || ||||| || |||||| Sbjct 280785 AGAATCTTTAGATCAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTG 280726 Query 57892 TAAGGTTCGTTCCAAGCCGATACTCCTTGTTGAGGCTTTTGTAGCGCCGCCCAAGGATCG 57951 || ||||| ||||| | || | ||||| ||| || ||||||| || ||||| || ||| Sbjct 280725 TATGGTTCATTCCAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCG 280666 Query 57952 TGTATCGTTACTTTGAAATCTTCTCGGCCTGCACACGAACGTTGCAACGCTTCAAAACTA 58011 || || | |||||| || ||||||||||| || || | || ||||||| ||||| Sbjct 280665 TGAATGGATACTTTAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTT 280606 Query 58012 CCTGTAATCGTCTTT-AGACTGTCGTTGATGCCATCGCCTCCGCAAATAGGCACGAAACC 58070 || ||| ||||| | |||||||||||| ||||| || || ||||| || | ||||| Sbjct 280605 CCCTCAATT-TCTTTCAAACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACC 280547 Query 58071 GTACAACAAATGAGTCAAATTGGGTACGGGTACTTTATCAACTGGATATTTACGACCGTA 58130 |||||| | |||||| ||||| || | |||| || || ||||| || | | || Sbjct 280546 GTACAAAAGATGAGTTAAATTCGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATA 280487 Query 58131 CACACTCCACTCCACGAAATAAGCTCCCAC 58160 || | ||| || || || ||||| || || Sbjct 280486 AACTCCCCATTCAACAAAGTAAGCACCAAC 280457 >seq429 Length=186180 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || ||||| ||||||| | || |||||| | || Sbjct 15486 ATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATCACCCTAGAGGTGGAGGCCTCC 15545 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||||||||| ||||| || ||| || || || || || |||||||||||| Sbjct 15546 GACACTATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCTGACCAA 15605 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || |||||| | ||||||| || || || ||| || || Sbjct 15606 CAGCGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGGCGTACCCTGTCCGACTATAAC 15665 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| || ||||| || ||| | ||||| | ||||| Sbjct 15666 ATCCAGAAGGAATCTACACTACACTTGGTGTTGAGGCTTCGTGGAGG 15712 >seq53 Length=2198565 Score = 120 bits (132), Expect = 3e-22 Identities = 170/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| || || |||| || ||| |||||||| | || || || | || Sbjct 1830985 AATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTC 1831044 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || | || |||| |||| || ||||| ||||| ||||||||||| Sbjct 1831045 AGACACCATTGAA--AATGTTAAAGCTAAAATCCAA-GACAAGGAAGGTATTCCACCTGA 1831101 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| || || |||| || || || || ||||| ||||||| || || || || || Sbjct 1831102 CCAGCAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTA 1831161 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230 ||| |||||||| ||||| || | ||| | || || | || ||||| || |||| Sbjct 1831162 CAACATTCAAAAGGAATCAACCTTGCATCTTGTACTCCGTCTGAGAGGTGGCAATT 1831217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433289193852620