Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq326 223 4e-53 >seq326 Length=503882 Score = 223 bits (246), Expect = 4e-53 Identities = 778/1198 (65%), Gaps = 41/1198 (3%) Strand=Plus/Minus Query 51260 GTGCATGGCGTTCAGTAGGTCGCCGTTGTCAGCGTCGATTTCCCACGCAAACAATCCCGC 51319 || ||| ||||||| || ||| ||||| || ||||| ||||||||||| ||||| || | Sbjct 281638 GTTCATTGCGTTCAATATGTCACCGTTATCTGCGTCTATTTCCCACGCGAACAAACCACC 281579 Query 51320 CAACCCGTTCGCAAGCACGTACTGGCCCTTGGCGCGAACGGATCGAGCGTTGTCGAACGT 51379 | ||| ||||| | || || || |||||||| ||||||||| | || Sbjct 281578 TAGGTAATTCTTTCTTACGTATTTACCTTTCTCGGTAACGGATCTCGCGTTGTCGTATGT 281519 Query 51380 GATCAGGTTGCCCGC--GATCGGTTCGAAGCCGTACGCAGCCTCGGCGATCAGATCGTAG 51437 | || ||| ||| ||| |||| ||| | || ||||| | ||| | ||||||| Sbjct 281518 AA-CAAGTTCCCCTGTAGAT-GGTTTGAACACATAAGCAGCTTGGGCAACGTTATCGTAG 281461 Query 51438 TAGAACTCGTAGTC--TTTGACGAACTCG-TTCGCGATCTGCCGATAGTCGACCACCCCA 51494 | |||||| | | ||||| || | || || || | || || |||||||| ||| Sbjct 281460 TGGAACTCCCATTTGTTTTGAGCAATGCCATTTGCAATTTCCCTGTAATCGACCACACCA 281401 Query 51495 TTTTCCCAGGTGCCTTCGATGGGTCCGCCGGCGACGCCGCTGAA-------CCAGTTCGG 51547 | | ||| ||||| | | ||||| |||| || |||| ||| || | Sbjct 281400 TCCTGCCATGTGCCCTTGCAAGGTCCTGTTGCGATCCCCGTGAAAGGATTACCA--TCTG 281343 Query 51548 T-TCGTAGTCGTAG-CCGGTCACGTTCGACCAGCCGCGAGCGTACATCGCCACGCCGACG 51605 | | | || ||| |||||| || || || | ||||| || || || ||| Sbjct 281342 TATAATTGT-GTACTCCGGTC---------CACCCACGTCCATACATTGCAACACCTACG 281293 Query 51606 ACGATCTTCTGATTGCGCACGCCCTGTTCGAGAAGCGACGACACGGCATAGTCGGTGGTG 51665 || || |||| | || || || | | || || || | |||| ||||| Sbjct 281292 ACAATTTTCTTCGGGTTTACACCTTGAGCCAATAGGTACTGAACACCGAAGTCTGTGGTA 281233 Query 51666 TACTTTTCGTCGGGGTTCCATTGGGGCGCGAACAGTGTGGTCTGGTAGCCCAGATCGGTG 51725 || |||| | | |||||| | ||| || |||||| ||| || | || | || | Sbjct 281232 TAAGTTTCCTTTGAGTTCCACTCGGGAGCATACAGTGCGGTTTGATGACCTA-ATGTATC 281174 Query 51726 -TTGGACCACGCACCCTTGAAATCGTAGTTCATGAGGAAAATGTAATCCAACTGCGTCTG 51784 |||||||| |||||||| || |||||| |||| | ||||| | |||| | |||| Sbjct 281173 ATTGGACCAAGCACCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTG 281114 Query 51785 CGCCCGAGC---GTAGTCGACGACTTGAATTTTATCGTAGCCCGCGCTGATGGCGCTGGT 51841 ||| ||| |||||| || ||||| ||||| || | || || || || || || Sbjct 281113 CGC---AGCTTTGTAGTCTACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGT 281057 Query 51842 CAACAGGTACGAACGGTTCGTGGCGGCGCTCAACTCGTCGAGCATGTCGCGCAGCTCGGT 51901 || |||| | | | | | || |||| ||||| || || ||||| | Sbjct 281056 TAATTCGTACTTCTTGCCCATTTCATTGGATAATTCGTTAAGCATTTCTCGAAGCTCCTT 280997 Query 51902 CAAAAGCGTCACGTACGTCGCACCATCGCGATCGGGATCGCCCAG-GTCGGGATTGGCGC 51960 || | || || ||||||| | ||| | || || |||||| ||| ||| Sbjct 280996 CATTAATAAAACATAGACTTCACCATCCTTA---GGACCACCAAGTGTCGGGTTTG-CGC 280941 Query 51961 CTTTGCCGCCCGGAAACTCCCAGTCGACGTCGACTCCGTCGAAGAACTTCCAAGTCAGCA 52020 | || || || || || |||||||| | ||| || || ||||| || ||||| || | | Sbjct 280940 CCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTGAA 280881 Query 52021 GAAACTCGCGAACCGATTCGACGAAGGTTGCGCGTTTGCTCGCGTCGTGCAGGAAGAAGA 52080 | || || || || || | ||| || | || | ||| | | |||||||| Sbjct 280880 GGAAGTCTTTTACAGAGTCAATGAAACGCGCTCTCTTTACCTTGTCATCGAAGAAGAAGA 280821 Query 52081 ACGGATCGGACAGCGTCCAACCGCCGATCGAGGGCAGAATCTTGAGCGAAGGATTGGCCC 52140 | ||||| | || ||||||||||| || || || |||||||| || ||| | || Sbjct 280820 ATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTTGCTT 280761 Query 52141 GTTTGGCCGCCATCAGCTGTCCAAAGTTTCCCTTGTACGGATCGTTCCAGGCCGAGACGC 52200 |||| | ||||| ||| |||||||| || ||||| || || ||||||| || | | Sbjct 280760 GTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTC 280701 Query 52201 CTTTCTGCGGTTTCTGCAGCGCCGCCCAGGGATCGTGAATCGTCACCTTAAAGTCCGACC 52260 |||| || ||||| || | || |||||||| |||||||| | || |||||||| | Sbjct 280700 CTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTC 280641 Query 52261 TGCCCACGCACGACCGTTGCAACGCTTCGAAACTGTTGTCGATCGGTTTCAGGCTGTCGT 52320 ||| ||| || | || ||||||| |||||| || || ||||| ||||||| Sbjct 280640 GGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCAAACTGTCGT 280581 Query 52321 TGATGCCGTCGCCTCCGCACATGGGAATGAAGCCGTACAGCAGATGCGACAGGTTCGGCA 52380 |||| || || || || || || || || || ||||||| ||||| | | ||||| | Sbjct 280580 TGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGGGA 280521 Query 52381 ACGGCACCAGATCTACGGGAAAGTTGCGCAAGTAAACGCCCCATTCGACAAAGTAGGC 52438 || | | || |||||| | || | ||||| |||||||| |||||||| || Sbjct 280520 TTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAGC 280463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537553821146080