Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq183 187 3e-42 seq303 134 2e-26 seq148 134 2e-26 seq578 131 2e-25 seq319 129 7e-25 seq268 127 2e-24 >seq183 Length=738700 Score = 187 bits (206), Expect = 3e-42 Identities = 172/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 ||||||||||| || | || ||||||||||| ||||| ||||| ||||||||||| || Sbjct 171073 ATGTATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGA 171014 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || ||||||||||| ||||| || | || || ||||| || || || || || ||| Sbjct 171013 AAGCCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGA 170954 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||||||||| ||||| ||||| ||||| |||||||||| |||||| || || || Sbjct 170953 TTTTCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAAGTGC 170894 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 ||||| || || || | |||||||| || | ||| Sbjct 170893 CTCTCACAGTCCTTTAGACTGTCCCAATCAGACAAATC 170856 Score = 141 bits (156), Expect = 1e-28 Identities = 170/227 (75%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 93110 AAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGT 93169 |||||| | || | ||| |||| ||||||||||| |||| || || | ||||||| Sbjct 171514 AAACCT-CATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTC 171456 Query 93170 TTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCA 93229 || || ||||||||||||||||||||||| ||||| || || || || || || || ||| Sbjct 171455 TTTTTCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCA 171396 Query 93230 AATGCCACAATACGTTCGGCAAAATTTGCGGAATTAC-TGCTGATCCATTTTAAAGCCCA 93288 ||||| ||||| | ||| |||| | || || || | |||| ||||| | | |||||| Sbjct 171395 AATGCTACAATTCTTTCACCAAATGTAGCAGATTTGCTTGCT-ATCCACTGGAGAGCCCA 171337 Query 93289 ATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 ||| || || ||||| | ||| || || || || | ||| || |||| Sbjct 171336 ATCTGCCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAATA 171290 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/154 (75%), Gaps = 5/154 (3%) Strand=Plus/Minus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCATAACACCAC 92800 || |||| || ||||| | ||| || ||||| || || || | | ||| || || | Sbjct 173517 ATCAGAACTCGGCATCCAATGTGAAGACATTATCGTTAGGGTT-TGA--CATGACCCCCC 173461 Query 92801 ATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCG 92860 | |||||||| || || ||||| ||||||||||||||||| |||||||| | ||| ||| Sbjct 173460 ACTTTTGGTACTCTCCGACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCAAGAGAGATCA 173401 Query 92861 AATTCA-CTAGT-GATTGGATTCTTGGCGTTATA 92892 |||||| ||| | ||||||||| | || ||| Sbjct 173400 AATTCATGAAGTCAAATGGATTCTTCGTGTGATA 173367 >seq303 Length=617301 Score = 134 bits (148), Expect = 2e-26 Identities = 83/88 (94%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 79086 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 79027 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||||||||| Sbjct 79026 GTGGGTTCGAACCCCACACCTGACAAAT 78999 >seq148 Length=1369482 Score = 134 bits (148), Expect = 2e-26 Identities = 85/91 (93%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 310657 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 310598 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||||||||||||||||||||| ||| Sbjct 310597 TGGGTTCGAACCCCACACCTGACAAATCATT 310567 >seq578 Length=1472074 Score = 131 bits (144), Expect = 2e-25 Identities = 81/86 (94%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 760848 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 760907 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||| Sbjct 760908 TGGGTTCGAACCCCACACCTGACAAA 760933 >seq319 Length=829163 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 280399 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 280458 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||||||||||| || Sbjct 280459 GTGGGTTCGAACCCCACACCTGACAGAT 280486 >seq268 Length=1111824 Score = 127 bits (140), Expect = 2e-24 Identities = 87/96 (91%), Gaps = 4/96 (4%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 241144 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 241085 Query 126324 TGGGTTCGAACCCCACACCTGACAAA--TTATTATT 126357 |||||||||||||||||||||||| | || ||||| Sbjct 241084 TGGGTTCGAACCCCACACCTGACAGACTTTTTTATT 241049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556809652335520