Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq326 324 1e-83 seq401 219 4e-52 seq53 172 5e-38 seq578 82.4 6e-11 >seq326 Length=503882 Score = 324 bits (358), Expect = 1e-83 Identities = 809/1210 (67%), Gaps = 43/1210 (4%) Strand=Plus/Minus Query 48522 ATGTGCATAGCATTCAACAAATCGCCATTGTCAGCGTCGATTTCCCATGCAAAGAGGCCT 48581 |||| ||| || ||||| | || || || || ||||| |||||||| || || | || Sbjct 281640 ATGTTCATTGCGTTCAATATGTCACCGTTATCTGCGTCTATTTCCCACGCGAACAAACCA 281581 Query 48582 CCTA---AATTGTTGTCTAGCACGTATTGACCTTTGTCCATAACAGATTGTACACTATCG 48638 |||| |||| || ||| ||||||| |||||| || |||| ||| | | ||| Sbjct 281580 CCTAGGTAATTCTT-TCTT--ACGTATTTACCTTTCTCGGTAACGGATCTCGCGTTGTCG 281524 Query 48639 TAACTGATGAGATCACCACTGTCCGCTTTGGTCACGTACGCTGCTTTAGC---GGTGTCG 48695 || | | || || || | | |||| ||| || || |||| || | | ||| Sbjct 281523 TATGTAACAAGTTCCCCTGTAGATGGTTTGAACACATAAGCAGCTTGGGCAACGTTATCG 281464 Query 48696 TCAT---ACCTATATTTGTATTCGTTAATACGCGATTG-AATGTGCCTATAGTCGACGAC 48751 | | || |||||| || ||| | | ||| ||| | ||| || ||||| || Sbjct 281463 TAGTGGAACTCCCATTTGTTTTGAGCAATGC-CATTTGCAATTTCCCTGTAATCGACCAC 281405 Query 48752 ACCGTCCTCCCACGTCCCGGTAACGGGGCCGACGGCCACACCGCTAAAGGGGTTATCGTC 48811 ||| |||| ||| || || | || || || | || | || || ||| | || Sbjct 281404 ACCATCCTGCCATGTGCCCTTGCAAGGTCCTGTTGCGATCCCCGTGAAAGGATTACCATC 281345 Query 48812 GCTGTAATCGAGGACACCGGTCCATCCGCGACCGTACATTGCCACACCCAATACAATTTT 48871 | |||| | | || |||||||| || || || |||||||| ||||| | |||||||| Sbjct 281344 TGTATAATTGTGTACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAATTTT 281285 Query 48872 GTTGGGTCTCACGCGTTGGTCCAAAAGAGCATT---CACCGCAAAATCCGTAGTGTAATG 48928 || || | || | ||| |||| || | | | ||||| || || || || ||| Sbjct 281284 CTTCGGGTTTACACCTTGAGCCAATAG-GTACTGAACACCG--AAGTCTGTGGTATAAGT 281228 Query 48929 TTCGTTTACATTCCATTTCGGAGCATACAATGCCGTCTGGTGACCCAAATCAACATTCGA 48988 ||| ||| ||||| | |||||||||| ||| || || ||||| || | |||| || Sbjct 281227 TTCCTTTGAGTTCCACTCGGGAGCATACAGTGCGGTTTGATGACCTAATGTATCATTGGA 281168 Query 48989 CCAGGCACCCTTAAAATCGTAGTTCATTAAAAATATTTTATCTAAATAATTTTGGGCATC 49048 ||| ||||||||||| |||||| |||| | ||| || | || | ||||| || ||| | Sbjct 281167 CCAAGCACCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCGCAGC 281108 Query 49049 GTTGTATTTAACCACGGCAATTTTGTCGTCGCCTGCGCTAATGGCGCTTGTTAATTCAAA 49108 ||||| | || || |||||||| || || ||||| || ||||||||| | Sbjct 281107 TTTGTAGTCTACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATTCGTA 281048 Query 49109 ATTACGGCCGGTTTCGCGTTCAAGA--TCGTCGAGCATTTCGCGTAATTCTTTCAAGAGA 49166 || ||| |||| || | | |||| |||||||| || | || |||| | Sbjct 281047 CTTCTTGCCCATTTCA--TTGGATAATTCGTTAAGCATTTCTCGAAGCTCCTTCATTAAT 280990 Query 49167 ACAACATAAGTGTGTCCGTCGTGTTGCGAATCGCCCAACAA----CGGATTCGCCCCTTT 49222 | |||||| | || || | | || ||| ||| ||| || || || || Sbjct 280989 AAAACATAGACTTCACCATCCT--TAGGA-----CCACCAAGTGTCGGGTTTGCGCCCTT 280937 Query 49223 GCCGCCCGGAAATTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCAAGTTAACAAAAA 49282 || || || |||||||| |||||||| || || |||||||||||||| ||| | || Sbjct 280936 ACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTGAAGGAA 280877 Query 49283 TTCGCGCACCGAATCTAC-AAACACG-TCACGTTTA--TGCGCATCGTGCATAAAGTAAA 49338 || || || || | |||| || || | |||| | ||||| | ||| | | Sbjct 280876 GTCTTTTACAGAGTCAATGAAACGCGCTCTC-TTTACCTTGTCATCG---AAGAAGAAGA 280821 Query 49339 ATGGATCGGACAACGTCCAACCCCCGATGGATGGCAATACTTTTAAATTGGGATTTGCTT 49398 ||||||| | | |||||||| || || || || | | |||| || || |||||| Sbjct 280820 ATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTTGCTT 280761 Query 49399 TTTTAATTGCCATCAATTGACCGAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACAC 49458 ||| | | |||||| || || || ||||||||||| ||||| ||||| | || | | Sbjct 280760 GTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTC 280701 Query 49459 CTTTTTGGGGTTTTTGCAGCGCAGCCCACGGATCGTGAATAGACACTTTGAAATCGTCCC 49518 ||||||| |||||||| | |||||||| || |||||||| || ||||| || || || | Sbjct 280700 CTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTC 280641 Query 49519 GGCCAGCGCAACTTTTTTGTAATGCCTCAAAACTGCCCGTTATCGTTTTCAAACTGTCGT 49578 ||||| |||| | | ||||| || | ||||| ||| || |||||||||||||| Sbjct 280640 GGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCAAACTGTCGT 280581 Query 49579 TAATGCCGTCGCCCCCGCAAATTGGCACGAAACCGTACAGCAGATGCGATAGATTTGGTG 49638 | || || || || || ||||| || | |||||||||| ||||| | || ||| || Sbjct 280580 TGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGGGA 280521 Query 49639 CGGGTACGCGATCGGCGGGAAACGATCGACCGTACACACCCCACTCGACAAAGTACGCAG 49698 |||| || || ||||| || || | || || ||||| || |||||||| ||| Sbjct 280520 TTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAGCAC 280461 Query 49699 CGACAACTTT 49708 | ||||| || Sbjct 280460 CAACAACCTT 280451 >seq401 Length=384550 Score = 219 bits (242), Expect = 4e-52 Identities = 712/1093 (65%), Gaps = 31/1093 (3%) Strand=Plus/Plus Query 128776 GACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATG 128835 || ||||| || ||||||| ||| || | || || || || ||||||||||| ||||| Sbjct 356774 GATTTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATT 356833 Query 128836 CCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTG 128895 || ||||| | || ||||||| | || | ||||| | ||||| | | || | Sbjct 356834 CCAGTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTT 356893 Query 128896 GGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCA 128955 |||| | | | ||||||||| || || |||||||||||||| | ||| | ||| || Sbjct 356894 GGTTCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCT 356953 Query 128956 GCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACG 129015 ||||| ||| |||| ||| |||||||| || |||||||| | |||| | Sbjct 356954 GCCATTTGGATCGTCGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATT 357013 Query 129016 TGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGC 129075 | |||||| ||| ||| || || || | || ||||| ||| || |||| | Sbjct 357014 TCTTTTGGAATTCTTTCGATATTTTGAATTGAACCATTGTTATGAATGATAAGGTTTTTC 357073 Query 129076 ATCTGTTCGTTGTACAAATTCAGTTTGA-TCAAATCGTCGGTCAAGT-AT--TTGTTTAT 129131 || | ||| | | | || | | ||| | ||||| | |||| || | ||| | Sbjct 357074 ATGTCTTCATCCCATAGAT-CTGCTTGCGTTAAATCTT---TCAAAAGATGATGGTTCAC 357129 Query 129132 TACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAA 129191 ||||||||| || || | |||||| | | || ||||| || || || ||||| Sbjct 357130 TACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAA 357189 Query 129192 CGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAG 129251 |||||||| || || | ||||| || || | ||||| ||||| || | | |||| Sbjct 357190 GGATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCAT---AGGCGCTAAAAG 357246 Query 129252 C---GAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACAT 129308 | ||||| || | ||||| | ||| | | ||||| ||| | ||| | Sbjct 357247 CAAAGAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAG 357306 Query 129309 CGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGA 129368 || ||| | | |||||||| || |||||||| ||||| |||| | || || Sbjct 357307 GTCCGTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTATT 357366 Query 129369 AAAGTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCC 129428 ||| | || || || | || ||| ||||| || || ||||| || || || Sbjct 357367 TTTAAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCC 357426 Query 129429 AAAATAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTAC 129486 | ||||||| || || ||| |||| || || || | || | || ||||| || Sbjct 357427 ATAATAAATAGTCTCA--AATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATAT 357484 Query 129487 GGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGA 129546 || ||||| | | ||||| || ||||||||||||| ||| | || || |||| Sbjct 357485 GGATAACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTG 357544 Query 129547 TGTTTTCTATTGGATTTTTGTGC--CGACAACAAGGGATAGTAGTTGATGTCTATAATTT 129604 ||| | | || || |||| || | ||| |||||||| || | || ||||||| Sbjct 357545 TGTCTCATGTTTGAATTTTTAGCTTCTGGAACT--GGATAGTAATTCACATCAATAATTT 357602 Query 129605 TGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTA---CT 129661 |||||||||| | | | |||| || || | |||||| ||||||||||||| | Sbjct 357603 TGTTTAAATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTT 357662 Query 129662 CGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCAC 129721 | || || | |||||| |||| | || || || ||||| ||||| || Sbjct 357663 TGTCTTCA------TTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCA 357716 Query 129722 TTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGC 129781 ||| | || |||| || |||||||| | ||| | ||| ||| |||||| |||| Sbjct 357717 CTTCATCTTCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGC 357776 Query 129782 CCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGC 129841 | | | | |||||| ||||| |||| || | ||||| |||| ||| | || || | Sbjct 357777 CAAGGTTTTGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTC 357836 Query 129842 CCGTTTCGACTTG 129854 | || || ||||| Sbjct 357837 CAGTCTCTACTTG 357849 >seq53 Length=2198565 Score = 172 bits (190), Expect = 5e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| |||||||| | || || ||||| |||| || ||||||||| || | Sbjct 1830758 ATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTCT 1830817 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| ||||||||||||||||| ||||||||||| || || Sbjct 1830818 GACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCAG 1830877 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| || || ||||| || ||| ||||||| | || || |||||| Sbjct 1830878 CAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAAC 1830937 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||||| ||||| || | ||| | || || || Sbjct 1830938 ATTCAAAAGGAATCAACACTTCATCTTGTGTTACG 1830972 Score = 138 bits (152), Expect = 1e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||||||||| | || || ||||| |||| | || || ||| | | Sbjct 1830986 ATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTCA 1831045 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| ||||| ||||||||||| ||||||||||| || || Sbjct 1831046 GACACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCAG 1831105 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || || || || || || || ||| ||| || | || || |||||| Sbjct 1831106 CAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTACAAC 1831165 Query 22399 ATTCAAAAAGAATCCACCATACAT 22422 |||||||| ||||| ||| | ||| Sbjct 1831166 ATTCAAAAGGAATCAACCTTGCAT 1831189 Score = 132 bits (146), Expect = 4e-26 Identities = 164/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 || |||| ||||| || || || |||||| | || || ||||| |||| | ||||| | Sbjct 1830523 TTTTAAA-ATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTG 1830581 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 || | | || ||| | || || | ||| ||||| || |||||||| |||||||||| Sbjct 1830582 AACCTTCAGACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCAC 1830641 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || || |||||||| || ||||| || || ||||| || ||| ||||||| | || | Sbjct 1830642 CAGACCAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAG 1830701 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 | |||||||||||||| || || || | ||| | || || || Sbjct 1830702 ACTACAACATTCAAAAGGAGTCAACACTTCATCTTGTGTTACG 1830744 >seq578 Length=1472074 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| || || || |||||| | || || || || | |||||||| || ||| Sbjct 656035 GTCAAGATGCAGATCTTCGTAAAAACTCTCACGGGGAAGACCATTACTCTTGAGGTTGAA 656094 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 || | |||||| | || || | ||| |||||||||||||| || || || || || Sbjct 656095 CCCTCGGATACCATCGAAAATGTTAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCA 656154 Query 22333 GATCAACA 22340 |||||||| Sbjct 656155 GATCAACA 656162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419690411783620