Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq326 284 9e-72 seq53 93.3 3e-14 >seq326 Length=503882 Score = 284 bits (314), Expect = 9e-72 Identities = 674/996 (68%), Gaps = 42/996 (4%) Strand=Plus/Minus Query 83755 TTTG-AATTTGACGATAATCTACAACGCCATCCTCCCACGTGCCCG-GTATTGGCCCGTT 83812 |||| ||||| | ||||| || || ||||||| ||| |||||| | | | || ||| Sbjct 281430 TTTGCAATTTCCCTGTAATCGACCACACCATCCTGCCATGTGCCCTTGCAAGGTCCTGTT 281371 Query 83813 GCCAGTTCCGGTAAAATAGTTATCATTCGTATAATTTGTTAGGCCGGTCCAACCGCGGCC 83872 || | | || || ||| ||| ||| |||||||| || |||||||| || || || Sbjct 281370 GCGA-TCCCCGTGAAAGGATTACCATCTGTATAATTGTGTACTCCGGTCCACCCACGTCC 281312 Query 83873 GTACATGGCAACGCCAATAATTATTTTGTTGGGATCAACACCCTGTTTAAGTAGCACACT 83932 ||||| ||||| || | | ||||| || || | ||||| || | ||| ||| Sbjct 281311 ATACATTGCAACACCTACGACAATTTTCTTCGGGTTTACACCTTGAGCCAATAGGT-ACT 281253 Query 83933 GA-CAGCGTGATGTGTGGTGTATAACTCTTCC---GAGTTCCAACTCGGC-GCGTAAATT 83987 || || || | |||||| |||| | |||| |||||||| ||||| || || | | Sbjct 281252 GAACACCGAAGTCTGTGGT--ATAAGT-TTCCTTTGAGTTCCA-CTCGGGAGCATACAGT 281197 Query 83988 GTGGTTTGGTAGCCCAAATCCGTGTTTG-ACCAAGCACCTTTAAAATCATAATTCATTAA 84046 | |||||| | | || ||| | ||| |||||||||| ||||| || || |||| | Sbjct 281196 GCGGTTTGAT-GACCTAATGTATCATTGGACCAAGCACCCTTAAAGTCGTAGCTCATAAC 281138 Query 84047 AAATATTTTTCCTAAAGACTTTTGCGCCTCGTCATAGTTTACCACGGCAATCTTGTCGTA 84106 ||| || | | | | || ||||| | | |||| ||| || || ||||| | Sbjct 281137 AAAAATATGGTCCATGTAATTCTGCGCAGCTTTGTAGTCTACAACTTGGATTTTGTCCCA 281078 Query 84107 ACCCGCACTAATAGCGCTTGTTAATTCGTAAACCCTGCCAGTTTGCGATTC--TAGCTCG 84164 || ||||||||||| |||||||||||| | |||| ||| ||| || ||| Sbjct 281077 TCCAGCACTAATAGCTGATGTTAATTCGTACTTCTTGCCCATTTC--ATTGGATAATTCG 281020 Query 84165 TCTAACATTGCGCGCAGTTCCTCTAATATTAAAATGTATGTTTTGGCGTCACGTTC---A 84221 | | |||| | || || |||| | || ||||| || | | |||| || | Sbjct 281019 TTAAGCATTTCTCGAAGCTCCTTCATTAATAAAACATA------GACTTCACCATCCTTA 280966 Query 84222 GCATCCCCCAACGACGGGTTGGCTCCTTTGCCTCCCGGAAATTCCCAATCGATGTCTACA 84281 | | | || | | |||||| || || || ||||| || |||||||| || ||||||||| Sbjct 280965 GGACCACCAAGTGTCGGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACA 280906 Query 84282 CCGTCGAAAAATTTCCATACTTGTAAAAACTCCTTAACCGAATTTACAA--AAACGTT-T 84338 || |||||||||||||| ||| | || || || || || | ||| ||||| | Sbjct 280905 CCATCGAAAAATTTCCAGGTTTGAAGGAAGTCTTTTACAGAGT---CAATGAAACGCGCT 280849 Query 84339 CTTTTTTCAACATTGTGCATGAAATAA----AACGGGTCCGACAACGTCCATCCTCCTAT 84394 || ||| || |||| ||| || || || || || | | ||||| || || || Sbjct 280848 CTCTTT---ACCTTGT-CATCGAAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAAT 280793 Query 84395 GGACGGAAGAATCTTTAGGTGCGGGTTCGCCAATTTAGCTGCCATCAATTGTCCAAAATT 84454 || |||||||||||||| | || | || ||| | |||||| || ||||| || Sbjct 280792 AGAAGGAAGAATCTTTAGATCAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTT 280733 Query 84455 GCCTTTATACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGCTTTTGTACGGCGGCCCA 84514 |||||| || ||||| ||||| | || | || ||||| || ||||||| ||| ||||| Sbjct 280732 GCCTTTGTATGGTTCATTCCAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCA 280673 Query 84515 CGGATCGTGGATGGCAATTTTAAAATCCGCACGTCCCCTGCACGATCGTTGCAGAGATTC 84574 || ||||| |||| | |||||| || | || || ||||| |||| || | | || Sbjct 280672 GGGGTCGTGAATGGATACTTTAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTG 280613 Query 84575 GAAACTACCGGGTATCACTTTGAGAGCATCGTTTATTCCATTACCGCCGCAAATGGGTAT 84634 |||||| || || |||| | | ||||| ||||||| ||| || ||||| || || Sbjct 280612 GAAACTTCCCTCAATTTCTTTCAAACTGTCGTTGATTCCATCACCACCACAAATCGGGAT 280553 Query 84635 GAAACCGTACAACAAGTGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAATTGCG 84694 ||||||||||| | || | |||||| || | || | ||| |||||| | || | Sbjct 280552 AAAACCGTACAAAAGATGAGTTAAATTCGGGATTGGTATACGGTCCACGGGATACTTTCT 280493 Query 84695 CCCGTACACTCCCCATTCAACAAAATACGCAGCAAC 84730 || ||||||||||||||||| || ||| |||| Sbjct 280492 AGGATAAACTCCCCATTCAACAAAGTAAGCACCAAC 280457 >seq53 Length=2198565 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || |||||||| | || ||||||||||| ||| | ||| ||||||| | Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || |||||| || || || ||| | || | |||| Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || | || ||||||||||| || || | |||||| || | | || ||||| Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| |||||||| || |||||| | || |||||| | | |||||| Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACGTCTCAGGGGAGGA 1830985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358092728581192