Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq92 87.8 4e-14 >seq92 Length=1326259 Score = 87.8 bits (96), Expect = 4e-14 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 3377 ACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGA 3436 |||| | |||| | |||||| | || | |||| | |||||||| || ||| || Sbjct 316745 ACAAGTTCGGTTCGTCGGGCGAGGTTGAGCGCCACGACGCGCTCTGCATTCTGCCGCTGA 316686 Query 3437 ACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATCA 3496 |||| |||||||||||||||||| | |||||||||||||||||| | | || | |||| Sbjct 316685 ACGTCGTCAACGAGAAGATCTACGTGTTCCTCTGGTTCTGGTTCGTCATCCTCGGCATCC 316626 Query 3497 TCA 3499 ||| Sbjct 316625 TCA 316623 Score = 84.2 bits (92), Expect = 5e-13 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 3344 GAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGG 3403 |||| ||||||| | | || |||||| || |||||||| ||||| ||||| || || Sbjct 219811 GAGTATTTCCAAAAGTAACAAAATGTACATTCCACAAATATGGTCCCTCGGGAACCGTGC 219752 Query 3404 AAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTT 3463 |||| | || || || ||| | | || ||| | ||||| || ||||| ||| | | Sbjct 219751 AAAAATTTGATGGTCTGTGCGTATTGCCTTTGAATATTGTCAATGAAAAGATATACGTAT 219692 Query 3464 TCCTCTGGTTCTGGTT 3479 |||||||||||||||| Sbjct 219691 TCCTCTGGTTCTGGTT 219676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12478996998000