Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008954.1 Length=4351 Score E Sequences producing significant alignments: (Bits) Value seq309 264 3e-67 >seq309 Length=657806 Score = 264 bits (292), Expect = 3e-67 Identities = 675/1027 (66%), Gaps = 52/1027 (5%) Strand=Plus/Minus Query 1579 AAGCAGTA-CTGCAAAGAAAACTTGTGTGGTGAAAGAAGAACATGTTTCGAAACCTAGAG 1637 || ||||| |||||||||||||| |||||| ||| |||||| |||||||||||| | | Sbjct 486373 AAACAGTAACTGCAAAGAAAACTCTTGTGGTAAAAAAAGAACGTGTTTCGAAACCGAAAA 486314 Query 1638 AACGAGCGAAGAAGAGGACTCGTGCGGAATCAATCGACAAACCTCAAAGCATAATACCGG 1697 | |||||||||||||||| || |||||| |||| | |||||||||| | ||| Sbjct 486313 ATCGAGCGAAGAAGAGGAGCTATGAGGAATCGTACGACGCAATTCAAAGCATACCAGCGG 486254 Query 1698 CACCCGTTGTTACGAAG------------------CCAGCAACTAAAGTTTCATCTTCAG 1739 | | | | | ||||| |||||||| | |||||||||||||| Sbjct 486253 CCTCTGATAATCCGAAGAAGAAAGAGCATGCGTCACCAGCAACGACAGTTTCATCTTCAG 486194 Query 1740 CGCCCAAATGTACCGTCAAGACTGNNNNNNNNNNNNAGAGCCCCTCGGTGTTAACCAGTG 1799 ||||||||| ||||| | | || ||| || ||||| | | ||||| | Sbjct 486193 CGCCCAAATCTACCGATGAAAATGCTG---------AGAACCTCTCGGAGATCACCAGCG 486143 Query 1800 CTGCTGATAAAGTGATTTTCTGGAGTGAAATAATACATTGTGACTTCAAGTCGACCAACT 1859 ||||||| || | | |||||||| || ||| || || |||||||||| ||||| || | Sbjct 486142 CTGCTGACCAATTAAGTTTCTGGAAGGATATATTAGATAGTGACTTCAAATCGACGAATT 486083 Query 1860 TTATCAAGTTATTGGAANNNNNNNNATTCAGTGAAGAACAAATCGAGATGTTGAAGCAAT 1919 || || || || || ||| | ||| |||||| | || | | | Sbjct 486082 ATACCATGTATTTAAAAAATTCTGGATTTACTGATGAACAAGCCCAGGCTATACAAAGAG 486023 Query 1920 CATTTGCGCATTTGA---CTCGAGCCTTTCATCGCAGGCCCACAAAACCTCTCCGTTTCA 1976 |||| |||| | ||||| ||| |||| | | || |||| || | | || Sbjct 486022 AATTTA---ATTTAATGTCTCGAAAGTTTTGTCGCGGACTCAGAAAAATTCAACCATGCA 485966 Query 1977 TGAAAACATATGAATGTATAGAATGTAATTTTTCAATATCTCACGAGTGCTTGGCTATCG 2036 |||||||| ||| ||| |||||||||||||||||||||| || |||||| | | || Sbjct 485965 TGAAAACACATGCGTGTGTAGAATGTAATTTTTCAATATCCCATGAGTGCACGTCCATAC 485906 Query 2037 ATACTACGCGATACTGGACCTTTGGCGGTAACGCTCCATGTATACATTTTATCAGACCCG 2096 | | | ||| || ||||| ||| ||| |||||||||||| ||||||| ||| | ||| | Sbjct 485905 ACATTGCGCAATTCTGGAACTTGGGCTCTAACGCTCCATGGATACATTATATTACACCTG 485846 Query 2097 AGTCAACAACCATGTGCGCCTGTGATTTTACCATCTTTCATTCTCACTTTTCAAAA---T 2153 |||||| | |||||||| ||||||||||| ||| | ||||||||| || | || Sbjct 485845 AGTCAATGAACATGTGCGACTGTGATTTTAGCATTTGCCATTCTCACATTATAGAAGAGA 485786 Query 2154 CAAAGTCCAA------GCGT---GC-CG--ACCCTGTGCCGAGTTGTTCACCGAGTACCT 2201 | ||| | || |||| || || | | | ||| ||| || ||||||||| Sbjct 485785 CTAAGACTAAGAGAGGGCGTCAAGCTCGAAAACGTCAGCCAAGTCCTTTGCCGAGTACCA 485726 Query 2202 TGCCTGGCGTAAAAGTAAATTTATCTGTGAACTTGCAATGTTACAAGTGCGCGACGACTT 2261 |||| || || ||| |||||| ||||| | ||| || ||||| | || Sbjct 485725 CGCCTTTGTTAGAAAATAATCAATCTGTAAACTTTAATTGTACCAGGTGCGGCATGAAAA 485666 Query 2262 TATCCATGAAAAACCCGCCCAATGCCGCTTGCGCCGACATGAGCAACTTTGTCAGCGCAG 2321 || ||| ||||| || | |||| || | || | |||| | | Sbjct 485665 TAATCATAGCAAACCGAAATAACAAAGTTTGCTCCAAACTGTACGGTAAAATCAGTACGG 485606 Query 2322 ACGGTCGTGTTCGTAAAAAGTTCTGTGAATATGTCAGTGAAAATCTTGAATATGGACCAA 2381 || | ||| ||||| || || | ||| || | ||||||| | || ||| Sbjct 485605 ACACCAATCTTCTTAAAATGTACTACTACTATATCCATAAAAATCTGGTCCATACACCTC 485546 Query 2382 AAAATTCTCCGAATATATCAGAGTTCTTTTCTTGCCGCAATGACTGCTGCGTTTTATTTC 2441 ||| | | || | ||||| ||| ||||||||||| ||||| ||| ||| | ||| || Sbjct 485545 AAACTGCACCAATTATATTTGAGATCTTTTCTTGCAACAATGGCTGTTGCCTGATATATC 485486 Query 2442 ATCGTTGTGCTAAAGCCGGTATTGTTCGCAGCCCCATGCCAGTACAGA-CCCATCCACCA 2500 |||||||| | |||| || | || ||||| | ||| |||| | |||| | |||| Sbjct 485485 ATCGTTGTCCCAAAGACGTTGTTAATCGCAAATGCTACCCAATACAAACCCCACCGACCA 485426 Query 2501 TT-CATGTTAGCCGTCTAGATGAGCAAATGCAAGTAGTTTAGCCATCGACTGGTTGCGCA 2559 || ||| || | | | || | | | || | ||||||||||| ||| |||| || Sbjct 485425 TTACATTTTTACGAACCTAAGTAGTACA-GGAATCAATTTAGCCATCGGCTGATTGCACA 485367 Query 2560 TGGTAAC 2566 | ||||| Sbjct 485366 TTGTAAC 485360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13810090011120