Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_008989.1 Length=5108 Score E Sequences producing significant alignments: (Bits) Value seq301 832 0.0 >seq301 Length=710464 Score = 832 bits (922), Expect = 0.0 Identities = 1085/1494 (73%), Gaps = 121/1494 (8%) Strand=Plus/Minus Query 146 CCTGAATGTTaaaaaaaaGTTGTATGAGTTTAGTGTTTAAACGTTTCTGTATTTTATCAT 205 ||| |||||||||||| | |||| ||||||||||| | | ||||||| ||||| || || Sbjct 413357 CCTAAATGTTAAAAAA--GGTGTAAGAGTTTAGTGTATTA-CGTTTCTATATTTCATTAT 413301 Query 206 TGGCTCTTTGCATAATGNNNNNNNNNNNNNNNNNCACGTCGTCCGCACGTGAATAACAAT 265 ||||||| ||||||| |||| ||||||| ||||||||||||| Sbjct 413300 ATGCTCTTTCCATAATGTCAAAGATG--------CACGCCGTCCGCTCGTGAATAACAAT 413249 Query 266 GCAAATCCAAGGTGAAC-ATAT----------TAAA---CATATTGTGCCGA--TCCCAC 309 ||| || |||||| || |||| |||| ||||| ||| | || ||| Sbjct 413248 GCACATTCAAGGTCAAATATATCTGCTTAATGTAAAACACATATGTTGCTCAAATCGCAC 413189 Query 310 AGT----TGGGT--GTTTG------CGTGTAGCGATAATATCATAAATATAGAACCTAAC 357 | | | | | ||||| ||| |||||||| | ||||||| | | | Sbjct 413188 AATAACATCGTTTTGTTTGGTAACGCGTCTAGCGATA---TGGTAAATATTAAT--TTAT 413134 Query 358 TCAAGCGTAGGATGATA-TCTGAGGTCAGTAGTTGCTTTGAACGTCGAGCGTGTAGGACG 416 ||| ||| | || | |||| ||||||||||| | |||||| | || || ||||| Sbjct 413133 TCAGACGTGTGTTGTCAATCTGGTCTCAGTAGTTGCCTGGAACGTTTAACGCGTCGGACG 413074 Query 417 CGCTCACAACTTCGCGCCGTTTTAGCAGAAACCAAAGTT-----TCGCGTATCATCGTGA 471 || || |||| ||| | | || || |||| || |||| |||||| | Sbjct 413073 CGTTC---------CGCCATTTCAATAAAATCCGAAGTACAGTGTCTCGTACCATCGTAA 413023 Query 472 TGAATTTCCGAAATCGCAAAATATCACGACCTTCACCGCGGCCGCCAAAGCTGATGTCAA 531 |||||| ||| || ||||||||||| | || |||| |||||| | || | Sbjct 413022 TGAATTCCCGGAAACGCAAAATATCGCCGGCTACACCCCGGCCGGCGAATC--------- 412972 Query 532 GAAAGAATGCTTTGCCGGAGAATGTTATTCTCTGCCTCTACTTGAGTGAGTTCCTGCGTT 591 ||| ||||||||| ||||| |||||||||| | |||||||||||||| || Sbjct 412971 ------ATGATTTGCCGGATGATGTTGCGCTCTGCCTCTGCATGAGTGAGTTCCTGGATT 412918 Query 592 TTGCAGACTTTCGGAGCTTGGTGAAGGCTGTTTGGCCCAACAACGACGAAGGTGACATTG 651 |||| |||||||||| ||||| | ||||||||| ||||| |||||| |||| |||| Sbjct 412917 TTGCTGACTTTCGGAATTTGGTCCGGTCTGTTTGGCGTAACAATGACGAAAGTGAGATTG 412858 Query 652 TGCGATCGAGAATGTGGCAATTATCTACTCATATTGCTGAAATACCTTTCATCAACGGAA 711 | ||||||| | |||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 412857 TTCGATCGAAATTGTGGCAACTATCCACTCATATTGCTGAAATACCTTTCATCAACGGAA 412798 Query 712 AACAATTGAGCATTGAATTTAACTACAATCCATGGAGGAAAAATCAAGAGTGTATCCTTA 771 || |||||||||||||||| |||||| | || ||||| || | |||||| |||||||| | Sbjct 412797 AAAAATTGAGCATTGAATTCAACTACGACCCGTGGAGAAACAGTCAAGAATGTATCCTCA 412738 Query 772 TCAATGTTGAAACTCTATTACCGATATTCGGTAGGATCATGTTGCCGGTGGTAAACAAGT 831 ||||||||||| |||| |||||||| || ||| || ||||| | | | |||||| Sbjct 412737 TCAATGTTGAATCTCTGTTACCGATTTTTGGTGGGGTCATGCCCGCAGCGTCGGACAAGT 412678 Query 832 TTATCAGCGTATCGCAGATAGAAAACTATGTCAAAATGCACGTTCATCTGAACATGTGTT 891 || ||||||| || |||||| | ||| ||||||| |||| |||||||| |||||||||| Sbjct 412677 TTGCCAGCGTAGCGAAGATAGTAGACTTTGTCAAACTGCATGTTCATCTAAACATGTGTT 412618 Query 892 CCGACTATCGACACAGTTCCTGCTCATGTCACCTTAAGAATTATAATCCTAACGAGGCTA 951 | || || |||| ||||||||||||||| || |||| ||||| | | | |||||| Sbjct 412617 TGGGCTGTCAACACCGTTCCTGCTCATGTCGCCCGAAGATTTATACCCATGAGCAGGCTA 412558 Query 952 GAGCGTTCGCAAAGCCCTCAGTTGATGCATGCAAGTTTGGACACTTTCATCACTATTGCT 1011 |||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 412557 AAGCGTTCGCAAAGCCCTCAGTTACTGACTGCAAGTTTGGACACTTTCATCACTATTGCT 412498 Query 1012 CGGAACACGTTATTCATTGGTTAAAGttttttttAAATCCCTTGCTGGTGGCCAAAGAAG 1071 | ||||||||||||||||| ||||||||||||||| || |||||| ||||||||||| Sbjct 412497 CTAAACACGTTATTCATTGGGTAAAGTTTTTTTTAACCCCTTTGCTGAAGGCCAAAGAAG 412438 Query 1072 AAAATACTTCTCCTGACGAGGACGAGATCCAAAATTACTTGTCTTTTTCAAGTAA----- 1126 |||||| ||||||| | |||||||| ||||||| ||||||||||||| |||| Sbjct 412437 AAAATAATTCTCCTAATGAGGACGAAATCCAAAGTTACTTGTCTTTTATGGGTAAGGCAA 412378 Query 1127 -TGTTCTTTGAGGGACGGACGATACGCGGCGGGGTCAGAGCGTAGTGACCCAATATGTAG 1185 | |||||||| ||| |||| | | | ||||| || |||| |||||| | Sbjct 412377 TTACTCTTTGAGAGACCCACGAAA--AGTCAAGGTCAAGGCACAGTGCCCCAAT-TTACT 412321 Query 1186 TGTTAGCCGATAAATTGTAATC-ATAATTTTTTATTAGTAAACAAACT--GGAAGCGTGC 1242 ||| || | ||| | || ||| || ||||||| || ||| |||| ||| | ||| Sbjct 412320 TGTAAGTCAATATGTCGTCATCGTTATTTTTTTACGTGTCAACGAACTTCGGA--CATGC 412263 Query 1243 CGTCTGCTAGTTTTTAGCGATATAGATAAGCAGCGCAACTTGGCTTCCCTGCTTGAACAC 1302 ||| |||||| | ||| |||||||| ||| | ||| | | || ||| Sbjct 412262 TCTCTAATAGTTTATTGCG---------AGCAGCGCGACTAGCCTTGACCG-TTAGACAT 412213 Query 1303 TCATGTAATAAAATGATTCAGCAATTATATGTTTGTTTTCATTTCCTTTCTGTGTCCCTC 1362 | ||| |||| |||| |||||||| |||||||| |||| ||||||| ||||| |||| Sbjct 412212 TTATGAAATATAATGGTTCAGCAA--ATATGTTTATTTTTATTTCCTCCCTGTGACCCTG 412155 Query 1363 AATCACTATAGAATAAAAGAAAATGTGTAGAACAAGTTCGAGAGGTATCAGGATATGAAT 1422 ||||| |||||||||| ||| | | | |||||| |||| || || |||| | | || || Sbjct 412154 AATCATTATAGAATAATAGAGATTATATAGAACCAGTTAGAAAGATATCGGAAGATAAA- 412096 Query 1423 ATCAAGGTGTATGAGTCTTCCAATATTACTCTAAGTTTATACTTAGTTTCTCTTACATAA 1482 ||||||||||||||| ||||||| || ||| ||| | || || ||| ||| Sbjct 412095 ---------TATGAGTCTTCCAATGTTACTCTGAGCTTA-ACTGAATTCCTTTTATATAG 412046 Query 1483 CAAATATTGCAAAAAGATCAAAATGAAGTTCAAGTCCCGAGGCTAGGAGAAAATTTTTGC 1542 || ||||| || || || ||| || || ||||| | | ||||||||||| |||| Sbjct 412045 CAGATATTTCAGGAAAATTTAAACAAAATTTAAGTCACAATACTAGGAGAAAA--GTTGC 411988 Query 1543 TACTATGACCACCGATAACAGTGTCGTGTGTTCTGATCACGGTTTGTTCAGCGC 1596 || ||| |||||||||||||| |||| ||||||||||||||| || Sbjct 411987 CAC--TGATTACCGATAACAGTGTGATGTG------TCACGGTTTGTTCAGTGC 411942 Score = 338 bits (374), Expect = 2e-89 Identities = 558/809 (69%), Gaps = 87/809 (11%) Strand=Plus/Minus Query 3772 ACCACTCGACATGCGTCAGTACTGTGAAACAAAGCACACATGTACCA-----GCGTCTAC 3826 ||||||||| || ||||||||| |||||| |||| |||||| ||||||| Sbjct 410468 ACCACTCGATGTGTGTCAGTACT---AAACAACAGACACCAGTACCATTTCAGCGTCTAA 410412 Query 3827 TAGGT--TCAGAACaaaaaaaaTTTGTACAAACTTTCGGTCTTTCCTCCAAGCCACCTTT 3884 || | || ||||||| ||| || ||||||| ||||||||||||||| |||||| Sbjct 410411 TATGCCGTCTAGACAAAAACTTTTTCTATGAACTTTCAGTCTTTCCTCCAAGCAACCTTT 410352 Query 3885 GTCGT-CGCTCCTTAGAACAGAGCAGACTAATCATGCACATTGTAGCTACAA--CCGTTG 3941 ||| |||| | |||| | |||||| |||||| || | | ||||||| |||| Sbjct 410351 AGCGTTCGCTACATAGAGAAATACAGACTTATCATGTACCTACTTGCTACAAAACCGTCA 410292 Query 3942 GAGAGATTTGAGTGCTGCCGTAGATAGTGTAAGACCACTGTA-CGTTC---TTCG----- 3992 | |||||| | |||||||||||| ||| | || | ||| | | | | || Sbjct 410291 AAAAGATTTTACTGCTGCCGTAGACCGTGCGAAACAAATGTCTCATGCCAATGCGACAAA 410232 Query 3993 ---CTATTCA-AGGTTTCAGACTGTTCGTAGAACGTGCTGGCTGGCAGAGGGTTATCATA 4048 || || || | |||||| ||| || |||||| ||||| | ||||| ||| |||| Sbjct 410231 GATCTCCGCAGAGATCTCAGAC-GTTTGTGGAACGTACTGGCCAGTAGAGGATTACCATA 410173 Query 4049 ATCATTGTGGCTTCAGAAAGTTATGGTTCAGTTGAAAACGTTCACTAGGGTATCCTCTGT 4108 ||||||||||||| |||||| | |||||||||||| | |||||||| | |||||| | Sbjct 410172 ATCATTGTGGCTTTGGAAAGTCACGGTTCAGTTGAATATGTTCACTATGTTATCCTTCAT 410113 Query 4109 AGCAGATAACGCTGTGGCACTACTAAGACGCATGGCACTGGTTTCAGTGATTGGTCAGGC 4168 |||| || || ||| || |||||| ||| | | ||||||| |||||| |||||||||| Sbjct 410112 AGCACATGACCCTGCGGAACTACTGGGACACGTTGCACTGGCCTCAGTGGTTGGTCAGGC 410053 Query 4169 CATGGCTTGACGTTAACAGCATACAATGACGAATCCTTATCGCTCTTTGTGCTCGCTCCA 4228 ||||| || |||| |||||| | || ||||||||| || |||||||| |||||| || Sbjct 410052 CATGGTTTAACGTCCACAGCAAAAAAATACGAATCCTCATGGCTCTTTGGACTCGCTTCA 409993 Query 4229 TCCGTGAAGCTTCGCAACCGGTGCAACTGAGGCTCCGCGTTCTCCTTTTGGTGCCTTATG 4288 ||| |||| || | | || Sbjct 409992 TCCATGAA---------------------------CGAGAT-----------------TG 409977 Query 4289 AGATTGCAGCATACTCGGACGATCTGCTATGGATGCAATGGATATTGATAGGAAGTACAC 4348 | ||| ||| || | | ||||||||| ||||||||| |||||| ||||| || | Sbjct 409976 A---AGCATCATCCTTAGGCAATCTGCTATTGATGCAATGACTATTGACAGGAAAAACGC 409920 Query 4349 ACGTAATAGTGAACATGCTGCCGAGCATGTTCGTCGGACGGTACAGAGACAGTGGTTATT 4408 ||||||||||||||||| |||| ||||||||| ||||||| || ||| |||||||| Sbjct 409919 TTGTAATAGTGAACATGCTACCGACCATGTTCGTTAGACGGTATAGGGACGGTGGTTATG 409860 Query 4409 GAGTACGATATGATTGGAGCCACAACTAAAACTTCAACATCTTTGCACGATAGTTTTCAC 4468 ||||| ||||| |||||| |||||||||||||||| ||| | Sbjct 409859 AAGTACCATATGTTTGGAG------------CTTCAACATCTTTGCATTATACAGGAAGC 409812 Query 4469 CCCTGAGTAT-GACAATCTCATACTGGCTCTCCCTCGAAATGCTTCTCTATGAAATTATA 4527 | |||| ||| | ||| | || | || | | |||| |||||||||| |||| ||||| Sbjct 409811 CTCTGACTATAAAAAATGTAATCCCAGCCATACTTCGAGATGCTTCTCTTTGAATTTATA 409752 Query 4528 GACCGTACGCGCTTGAGCGATTGACTGTA 4556 ||| |||||| ||| ||| ||||| |||| Sbjct 409751 GACTGTACGCTCTTAAGCCATTGAGTGTA 409723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16232295325860