Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq326 214 2e-50 seq429 129 5e-25 seq53 120 3e-22 >seq326 Length=503882 Score = 214 bits (236), Expect = 2e-50 Identities = 355/505 (70%), Gaps = 17/505 (3%) Strand=Plus/Plus Query 20441 TTGCTGCATATTTTGTAGAATGGGGCGTTTATCCTAGACAATTTCCCGTCGACAAGGTAC 20500 ||| ||| || ||||| |||||||| |||||||||||| | | |||||| ||| ||| Sbjct 280458 TTGGTGCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATAC 280517 Query 20501 CCGTTCCCAATTTGTCTCATCTGCTATATGGCTTTGTGCCAATTTGCGGCGGAGATGGTA 20560 | | || ||||| ||||||| | || || ||| | || ||||| || || ||||| | Sbjct 280518 CAATCCCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAA 280577 Query 20561 TCAACGACGCGTT-AAAG---TTGTCCCAGCCGGATAGTTATTTAGCTTTGCAACGTTCG 20616 |||||||| || |||| ||| || ||| |||| ||| || || | || Sbjct 280578 TCAACGACAGTTTGAAAGAAATTG----AG--GGA-AGTTTCCAAGCGTTACAGAGATCT 280630 Query 20617 TGCGCGGGCCGAGATAATTTTAAAGTTGCCATACACGATCCTTGGGCCGCTCTACAGAAA 20676 ||| |||||||| | |||||||| |||| ||||| || ||||| || |||| ||| Sbjct 280631 TGCAGTGGCCGAGAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAA 280690 Query 20677 CCACAAAAAGGAGTATCCTCTTGGAACGAACCGTACAAAGGAAACTTTGGTCAGTTGATG 20736 |||||||||||| | || || ||||| ||||| |||||||| |||||||| ||||||||| Sbjct 280691 CCACAAAAAGGACTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATG 280750 Query 20737 GCAACGAAACTGGCGTATCCTCATCTTAAAGTGCTACCTTCGATCGGCGGGTGGACTTTA 20796 | |||| || ||| |||| || | || ||||| || ||||| ||||| | Sbjct 280751 TCTTTAAAACAAGCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTC 280810 Query 20797 TCCGATCCGTTTTATCATATGCACGATCCGATCGTACGCCAAG---TTTTCATCGATTCT 20853 | ||||| || | || | | |||| | ||| || |||||| || ||| Sbjct 280811 GCTGATCCATTCT-TCTTCT--TCGATGACAAGGTAAAGAGAGCGCGTTTCATTGACTCT 280867 Query 20854 GTGGAAGAGTTTTTGTTGACGTGGAAATTCTTTGACGGCGTTGACATAGACTGGGAGTTT 20913 || |||| || | || |||||||| || || || || |||||||||||||| || Sbjct 280868 GTAAAAGACTTCCTTCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTC 280927 Query 20914 CCGGGAGGCAAAGGTGCGAATCCGA 20938 || ||||| || || || || |||| Sbjct 280928 CCTGGAGGTAAGGGCGCAAACCCGA 280952 >seq429 Length=186180 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || ||||| || || |||| |||||||| || || ||||| || ||| Sbjct 15713 ACCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGA 15654 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||||||||||||||||||| | || | |||||||||||| || || Sbjct 15653 CAGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGG 15594 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || || || ||||| || | | ||| | ||||||| || || || Sbjct 15593 GATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCAC 15534 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | || || || || || ||||| ||||| ||||||||| Sbjct 15533 CTCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATG 15485 >seq53 Length=2198565 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| |||||||||||||| || || || || |||||| | ||| || ||| Sbjct 1831182 GTTGATTCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCTTCCAATTGCTTTCCA 1831123 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| ||||| || ||||| || ||||| ||||| ||||| || ||| | ||| Sbjct 1831122 GCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGGAT-TTTAGCTTT 1831064 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | ||||| |||||| | | ||| || |||| || | ||||| || ||||| || Sbjct 1831063 AACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGT 1831004 Query 114365 TTTTACAAAAATCTGCAT 114382 ||| |||||||| ||||| Sbjct 1831003 TTTAACAAAAATTTGCAT 1830986 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| |||||||||||||| || | || || |||||| | || || ||| Sbjct 1830954 GTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCA 1830895 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||| || ||||| || ||||| ||||| ||||| ||| || ||| Sbjct 1830894 GCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGCTTTG 1830835 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| | || ||| || || | ||| | |||||||| || || ||| Sbjct 1830834 ACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTT 1830775 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||| ||||| Sbjct 1830774 TTAACGAAAATTTGCAT 1830758 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || |||||||||||||| || | || || |||||| | || || ||| Sbjct 1830726 GTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCA 1830667 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||| || ||||| || ||||| ||||| ||||| || ||| | ||| Sbjct 1830666 GCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGAT-TTTAGCTTT 1830608 Query 114306 AGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | | ||||| |||||| | | ||| || || | || | ||||| || || ||||| Sbjct 1830607 AACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTTTCCCGTAAGAGT 1830548 Query 114365 TTTTACAAAAATCTGCAT 114382 |||||| || |||||||| Sbjct 1830547 TTTTACGAAGATCTGCAT 1830530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420096775388976