Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq429 134 3e-26 seq53 113 1e-19 seq578 86.0 1e-11 >seq429 Length=186180 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| |||||||||| || || || || ||||| | |||||| || ||||| Sbjct 15677 TTCCTTCTGGATGTTATAGTCGGACAGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAA 15618 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 |||| ||||||||| | ||||||||| || ||||||||||| || || ||||| || Sbjct 15617 AATCAAACGCTGTTGGTCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATT 15558 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | || || || || ||||| ||||| || || || || || || Sbjct 15557 TTCGATAGTGTCGGAGGCCTCCACCTCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCAC 15498 Query 288462 GAATATCTGCAT 288473 || |||||||| Sbjct 15497 AAAGATCTGCAT 15486 >seq53 Length=2198565 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||||| || || ||||| || || ||||| | || ||||| || ||||| Sbjct 1830738 ACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCC 1830679 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 || || ||||| || ||||| ||||| || || ||| || ||||| || |||||| Sbjct 1830678 AACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGG 1830619 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| ||||| || ||||| || | || | ||| ||||| | ||||| || || Sbjct 1830618 ATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTTT 1830559 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| || ||||| ||||||||| Sbjct 1830558 CCCGTAAGAGTTTTTACGAAGATCTGCATT 1830529 >seq578 Length=1472074 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||||||||| || || ||||| ||||| || ||||| || | ||| | ||| Sbjct 656150 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCGATGGTATCCGAGGGTTCA 656091 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || ||||| || ||||| |||||||| Sbjct 656090 ACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTACGAAGATCTGCAT 656041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179543339961944