Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq326 345 4e-90 seq53 154 1e-32 >seq326 Length=503882 Score = 345 bits (382), Expect = 4e-90 Identities = 807/1199 (67%), Gaps = 35/1199 (3%) Strand=Plus/Plus Query 27473 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGTAATTTTGCCGCGGACCGCGTACCGGCG 27532 || |||||||| |||||||| || || | || | | ||| |||||| |||| Sbjct 280463 GCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAATC 280522 Query 27533 CCCAACCTGTCACATTTACTATACGGGTTCGTGCCGATATGCGGCGGCGACGGCATCAAC 27592 || || | | ||| | | ||||| || | ||||| || || || || || |||||| Sbjct 280523 CCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAAC 280582 Query 27593 GACAGCCTTAAAACTATTCCGGGTAGTTTCGAAGCGTTGCAAAAGTCGTGCGCGGGTCGT 27652 ||||| | ||| ||| ||| |||||| ||||||| || | || ||| || || Sbjct 280583 GACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGA 280642 Query 27653 GAAAACTTTAAAGTGGCCATTCACGATCCGTGGGCTGCATTGCAAAAACCACAAAAAGGC 27712 ||| |||||||||| |||||||||| || |||||||| || ||||||||||||||||| Sbjct 280643 GAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGA 280702 Query 27713 GTTTCGGCTTGGACGGAACAATACAAAGGTAATTTTGGACAGTTAATGGCGATAAAGCGT 27772 |||| | |||| |||| ||||||||| || ||||| ||||| ||| | |||| | Sbjct 280703 CTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAA 280762 Query 27773 GCAAACCCGCATTTAAAAATTCTACCGTCCATAGGAGGGTGGACGCTGTCGGATCCATTT 27832 |||| || || |||| ||||| || || || || || ||||| || | |||||||| Sbjct 280763 GCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTC 280822 Query 27833 TACTTTTTTCACGACGCTGGCAAACGCGCCACATTCGTCGAATCGGTTCGCGAATTTCTG 27892 | ||| || | ||| | || | || ||| | || || || || || || Sbjct 280823 TTCTTCTTCGATGACAAGGTAAAGAGAGCGCGTTTCATTGACTCTGTAAAAGACTTCCTT 280882 Query 27893 CAAACTTGGAAATTTTTCGACGGCGTGGACATCGATTGGGAATTTCCTGGCGGTAACGGC 27952 ||||| |||||||||||||| || || ||||| || |||||||| ||||| ||||| ||| Sbjct 280883 CAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGGC 280942 Query 27953 GCAAACCC-ACTGTTAGGCGATCCCCAACGAGACGGTTTAGTGTATGTGGTGTTGTTGCG 28011 |||||||| || || || | ||| | || ||| ||| ||||| | || || Sbjct 280943 GCAAACCCGACACTT-GGTGGTCCTAA---GGATGGTGAAGTCTATGTTTTATTAATGAA 280998 Query 28012 CGAACTTCGCGATATGCTCGATCAACTCGAACACCACACGGGCCGGCAATACGAACTGAC 28071 || ||||| || ||||| | || | | | | |||| | | |||||| | || Sbjct 280999 GGAGCTTCGAGAAATGCTTAACGAATTATCCAATGAAATGGGCAAGAAGTACGAATTAAC 281058 Query 28072 AAGTGCAATCGGCGCTGGCTACGACAAAATTGAGGTAGTTGATTACAACGAAGCGCAATC 28131 | || || | ||||| | |||||||| | || || || ||||| | ||||| Sbjct 281059 ATCAGCTATTAGTGCTGGATGGGACAAAATCCAAGTTGTAGACTACAAAGCTGCGCAGAA 281118 Query 28132 GTATTTGGACAAAATCTTTTTAATGAGTTATGATTTTAAAGGCGCTTGGTCCAACTCGGA 28191 || ||||| | || ||| | ||||| || || ||||| || ||||||||||| || Sbjct 281119 TTACATGGACCATATTTTTGTTATGAGCTACGACTTTAAGGGTGCTTGGTCCAA---TGA 281175 Query 28192 T---TTGGGCCATCAAACCGCTTTGTATGCGCCCGATTGGAAACCCGACGAGCGGTATAC 28248 | || || ||||||||||| ||||||| ||||| ||||| | | || ||||| Sbjct 281176 TACATTAGGTCATCAAACCGCACTGTATGCTCCCGAGTGGAACTCAAAGGAAACTTATAC 281235 Query 28249 GACCGATTTTGCGGTGCGCTCGTTGCTTCT---TCAAAAAGTACGTTCCGAA-AAAATCG 28304 || || || ||||| | || || | |||| ||| ||||| ||||| | Sbjct 281236 CACAGACTT--CGGTGTTC-AGTACCTATTGGCTCAAGGTGTA-AACCCGAAGAAAATTG 281291 Query 28305 TGATCGGTGTGGCAATGTACGGTCGCGGTTGGAGTGGCGTATCGGAATATTTAAACGATA 28364 | | ||||| |||||||| || || || |||| || ||| | ||| | | | || Sbjct 281292 TCGTAGGTGTTGCAATGTATGGACGTGGGTGGACCGGAGTACACAATTATACAGATGGTA 281351 Query 28365 ATCCCTTTACCGGCATCGCCACAGGCCCGGTGC-CCGGCACTTGGGAAGACGGCGTCGTA 28423 |||| || || || ||||| ||||| || ||| ||||| ||| | || || || || Sbjct 281352 ATCCTTTCACGGGGATCGCAACAGGACC-TTGCAAGGGCACATGGCAGGATGGTGTGGTC 281410 Query 28424 GATTACCGTCAAATTAAAAACAAACTATCCGAATATAAATATGTGTTCGACGTCGA---- 28479 |||||| | ||||| ||| | | || | |||| | |||| || ||| Sbjct 281411 GATTACAGGGAAATTGCAAATGGCATTGCTCAAAACAAATGGGAGTTCCACTACGATAAC 281470 Query 28480 --TGCTAATGCCGCTTACGCGTTTCAATCTAATACA-GGTAATTTGATAAGTTTTGACAG 28536 ||| | || ||||| | ||| || | |||| || || ||| | | | |||| Sbjct 281471 GTTGCCCAAGCTGCTTATGTGTTCAAACCATCTACAGGGGAACTTG-TTACATACGACAA 281529 Query 28537 CGTGGAATCGACGCT--CGGTAAAGGACAGTATGTAATCGAAAATAATTTGGGTGGGTTG 28594 || | ||| || | || ||||| | || |||| | ||| | | ||||| ||| Sbjct 281530 CGCGAGATC--CGTTACCGAGAAAGGTAAATACGTAAGAAAGAATTACCTAGGTGGTTTG 281587 Query 28595 TTTGCTTGGGAAATTGACGCGGACAACGGTGATTTGTTGAACGCCATG--CATGCCTCT 28651 || || |||||||| ||||| || |||||||| | |||||||| ||| |||| |||| Sbjct 281588 TTCGCGTGGGAAATAGACGCAGATAACGGTGACATATTGAACGCAATGAACATGGCTCT 281646 >seq53 Length=2198565 Score = 154 bits (170), Expect = 1e-32 Identities = 163/212 (77%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||||| || ||||| |||||||||||||| |||| | |||||| | ||||| Sbjct 1830967 CACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTC 1830908 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | |||||| || ||| | ||||| || |||||||| || ||||| ||||| || ||||| Sbjct 1830907 CAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTG 1830848 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 ||||| ||||| ||| || | || ||| ||| |||||||||| || | ||| | Sbjct 1830847 AATTTTA-GCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTT 1830789 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| || | ||||| ||||||||||||||| Sbjct 1830788 TGCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 Score = 131 bits (144), Expect = 2e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||||| || || || |||||||||||||| |||| | |||||| | ||||| Sbjct 1830739 CACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTC 1830680 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | |||||| || ||| | ||||| || |||||||| || ||||| ||||| || || || Sbjct 1830679 CAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTG 1830620 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | |||| ||||| ||| || | || || | || ||||||| || | ||| | Sbjct 1830619 GA-TTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTT 1830561 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAA 64448 | || || | |||||||||||| || |||||||||| Sbjct 1830560 TTCCCGTAAGAGTTTTTACGAAGATCTGCATTTTAA 1830525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||| |||||||||||||| |||| | || || | ||| Sbjct 1831197 AGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCT 1831138 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || || | || || || |||||||| || ||||| ||||| || ||| Sbjct 1831137 TCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCT 1831078 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| || | || || | || || || | || | ||| Sbjct 1831077 TGGA-TTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGT 1831019 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || |||| ||||| || |||||||||||| Sbjct 1831018 TTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499598907625120