Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq326 120 3e-22 seq53 109 5e-19 seq401 100 3e-16 seq429 98.7 1e-15 >seq326 Length=503882 Score = 120 bits (132), Expect = 3e-22 Identities = 278/415 (67%), Gaps = 7/415 (2%) Strand=Plus/Plus Query 28086 TGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGACGCCCTCAAGACCGTTC 28145 |||||||||| | ||||| || || || || || || |||||| | || || Sbjct 280542 TGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAACGACAGTTTGAAAGAAATTG 280601 Query 28146 CCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGCCGACTTCAAGGTGACGA 28205 || |||||| | ||| | ||| | || ||| || || | ||||| || || | | Sbjct 280602 AGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGAGAAGACTTTAAAGTATCCA 280661 Query 28206 TCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCGTCTCTACGTGGAACGAGC 28265 | ||||| |||||||| ||| | || || || ||||| || | ||| | ||||| || | Sbjct 280662 TTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGACTTTCTTCCTGGAATGAAC 280721 Query 28266 CGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTAGCCAATCCGCACTTGAAGG 28325 | ||||||||||||||||| || |||||| | ||| ||| | || | | ||| Sbjct 280722 CATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAAGCAAGACCTGATCTAAAGA 280781 Query 28326 TGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTCTTTCACATGCACGAC--GC 28383 | || | || || ||||| ||||| || | || |||||||| | | | ||| | Sbjct 280782 TTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTCTTCTTCTTCGATGACAAGG 280841 Query 28384 GACCGTGCGCCAAACG-TTCATCGATTCCGTCGTGGACTTTCTGCTGACCTGGAAGTTCT 28442 | | | || || ||||| || || || ||||| || | |||||||| || | Sbjct 280842 TAAAGAGAGC---GCGTTTCATTGACTCTGTAAAAGACTTCCTTCAAACCTGGAAATTTT 280898 Query 28443 TCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAGGAGCCAATCCCGA 28497 |||| || || ||||| || ||||| || || || || || || | ||| ||||| Sbjct 280899 TCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGGCG-CAAACCCGA 280952 >seq53 Length=2198565 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || ||| | || | ||| | | |||| |||||||||||||||||||| Sbjct 1831213 GCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGA 1831154 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || || || | ||| || || | |||| ||||| || ||||| || || Sbjct 1831153 CAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGG 1831094 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| |||||| ||| | | ||| | |||||| | | || || Sbjct 1831093 AATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAAC 1831034 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || ||||| ||||| |||||||| ||||| Sbjct 1831033 CTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| | ||| || || | ||| | ||||||||||||||||||||||||| Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | || || || | | |||| ||||| || ||||| || || Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| |||||| ||| | | ||| | |||||| | | || || Sbjct 1830636 ATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACT 1830577 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||| || || ||||||||||| || |||||||| Sbjct 1830576 TCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| |||||||||||||||||||| | || || || || | || || || | Sbjct 1830953 TTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAG 1830894 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | |||| ||||| || ||||| || || |||||||| ||||| ||| |||| | ||| Sbjct 1830893 CAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTC-TTGAATTTTAGCTTTG 1830835 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | ||| | |||||| | | ||||| || | || | ||||| || || || ||| Sbjct 1830834 ACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTT 1830775 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||| ||||| Sbjct 1830774 TTAACGAAAATTTGCAT 1830758 >seq401 Length=384550 Score = 100 bits (110), Expect = 3e-16 Identities = 223/335 (67%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 153027 TGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAA 153086 ||||| || |||||||| || || | ||| |||| |||| ||||| || || ||| Sbjct 357122 TGGTTCACTACTTGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAA 357181 Query 153087 GGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCC 153146 |||||||||||||| ||||| || || ||||| || |||| |||||| ||||| ||| Sbjct 357182 GGTTCAAAGGATTCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGCT 357241 Query 153147 ACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAACGCCTGCCAATCC 153206 | | |||||| || || | ||||| ||| | || || | || ||||| | Sbjct 357242 AAAAGCAAAGAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTC 357301 Query 153207 CACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGA 153266 || || ||| ||| | |||||||| || || || || | || |||| | || Sbjct 357302 CAAAGGTCCGTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGG 357361 Query 153267 CTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGC 153326 || ||| |||||||| || || || || | ||| ||||| || || | Sbjct 357362 CTATTTTTAAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAG 357421 Query 153327 GCGCCATAGTATATGGTTTCGGCGATTTGTTTATT 153361 || ||||| || || || || ||||||| ||| Sbjct 357422 GCTCCATAATAAATAGTCTCAAATATTTGTTGATT 357456 >seq429 Length=186180 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461 ||| || || |||| | || ||||| || ||||| |||||| || |||||| || Sbjct 15698 CAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGACAGGGTACGCCCATC 15639 Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521 || ||||||||||| | | || | |||||||||||| || || || || || || || Sbjct 15638 TTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGGATTCCCTCCTTATC 15579 Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581 ||| || || | | ||| | ||||||| | ||||||||| | || | || Sbjct 15578 CTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACCTCTAGGGTGATGGT 15519 Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| || || ||||| ||||| ||||||||| Sbjct 15518 CTTACCCGTGAGGGTTTTCACAAAGATCTGCATG 15485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496216818298560