Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq53 125 5e-24 seq429 116 3e-21 >seq53 Length=2198565 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || | ||| | ||| || || ||||| |||||||| || Sbjct 1831214 TGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTG 1831155 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || ||| | ||||| ||||| || |||||| | || | ||| || ||||| || Sbjct 1831154 ACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTG 1831095 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||||| ||| ||| |||| || || || | ||| | Sbjct 1831094 GAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAA 1831035 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || |||||||| |||||||| ||||| |||||||||||||| Sbjct 1831034 CCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| || | |||||| || || || ||||| |||||||| || || | | | || Sbjct 1830970 TAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATC 1830911 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| || || || ||||| | || | ||| || ||||| |||||| ||||||||||| Sbjct 1830910 TTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTC 1830851 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 |||||| ||| ||| |||| || || || ||| || |||| ||| ||||| Sbjct 1830850 TTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGT 1830791 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||| ||||| || ||||| || ||||||||||| Sbjct 1830790 TTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 107 bits (118), Expect = 1e-18 Identities = 157/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 ||| || | |||||| || || || ||||| |||||||| || || | | | || Sbjct 1830742 TAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATC 1830683 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 ||| || || || ||||| | || | ||| || ||||| |||||| ||||||||||| Sbjct 1830682 TTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTC 1830623 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||||| ||| ||| |||| || || || | ||| || ||||| || ||||| Sbjct 1830622 CTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGT 1830563 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 ||| || || ||||||||||| || || ||||| ||| ||| Sbjct 1830562 TTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT-TTTAAAA 1830523 >seq429 Length=186180 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 14962 CTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG 15021 || || || || || || ||||| || || || ||||| || ||| || | | | | Sbjct 15700 CTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGACAGGGTACGCCCA 15641 Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081 ||||| | |||||| |||||| | ||||||||||||||||| ||| ||||| ||||| Sbjct 15640 TCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGGATTCCCTCCTTA 15581 Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141 || || ||| || ||| |||| ||||| ||| || || |||| ||| ||| Sbjct 15580 TCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACCTCTAGGGTGATG 15521 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || ||||| ||||| || ||||| ||| Sbjct 15520 GTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTTT 15482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357359994206180