Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq326 140 3e-28 seq53 100 3e-16 >seq326 Length=503882 Score = 140 bits (154), Expect = 3e-28 Identities = 324/486 (67%), Gaps = 2/486 (0%) Strand=Plus/Plus Query 22322 TATTTTGTCGAGTGGGGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCG 22381 || ||||| || |||||||| || | | | ||| ||||| ||| | || | ||| Sbjct 280466 TACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAATCCCG 280525 Query 22382 AACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGAC 22441 || | | ||| | | |||||||| | || || || || || || || ||||||||| Sbjct 280526 AATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAACGAC 280585 Query 22442 GCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGAGCC 22501 ||||| | |||||| ||| | ||||| || | || ||| ||| Sbjct 280586 AGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGAGAA 280645 Query 22502 GATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAGGCGTG 22561 || || || || |||| ||||| || ||||| ||| |||||||||| |||||||| | Sbjct 280646 GACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGACTT 280705 Query 22562 TCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAAAAGAGCG 22621 || || ||||| ||||| ||||||||||||||||| || |||||| | | ||| ||| Sbjct 280706 TCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAAGCA 280765 Query 22622 AATCCTCATCTCAAAGTGTTAGCATCGATCGGCGGATGGACGTTGTCCGATCCGTTTTAT 22681 | ||| |||| || | | | || || ||||| ||||| | | ||||| || | | Sbjct 280766 AGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTCT-T 280824 Query 22682 CATATGC-ACGACAAGAACGTGAGACAAATTTTCATCGATTCGGTGGAAGAGTATTTGAT 22740 | | | | | |||||| |||| |||||| || || || |||| | | Sbjct 280825 CTTCTTCGATGACAAGGTAAAGAGAGCGCGTTTCATTGACTCTGTAAAAGACTTCCTTCA 280884 Query 22741 CACGTGGAAGTTCTTTGACGGCGTCGATATTGATTGGGAGTTTCCCGGCGGCAAGGGGGC 22800 || ||||| || || || || || || || || ||||| || || || || ||||| || Sbjct 280885 AACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGGCGC 280944 Query 22801 GAATCC 22806 || || Sbjct 280945 AAACCC 280950 >seq53 Length=2198565 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 || ||||| | ||| | || ||||| |||||||| ||||| || | ||||| | Sbjct 1830744 CGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCA 1830685 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || | ||| |||||||| |||| | || ||||| || || || || || |||||| Sbjct 1830684 TCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTG 1830625 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| || | | ||| | |||||| | | || ||||| | || | Sbjct 1830624 TCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATG 1830565 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || || ||||||||||| || |||||||| Sbjct 1830564 GTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475457125251520