Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq326 233 2e-56 seq401 183 3e-41 seq53 136 4e-27 seq429 98.7 9e-16 >seq326 Length=503882 Score = 233 bits (258), Expect = 2e-56 Identities = 633/963 (66%), Gaps = 13/963 (1%) Strand=Plus/Minus Query 50155 TGTAATCAACTACGCCGTCTTCCCAAGTGCC--TGCCGCCGGGCCGGTGGCGATTCCCGT 50212 ||||||| || || || || | ||| ||||| ||| || || || ||||| ||||| Sbjct 281417 TGTAATCGACCACACCATCCTGCCATGTGCCCTTGCAA--GGTCCTGTTGCGATCCCCGT 281360 Query 50213 AAACGGATTGTCGTCTTTGTAGCCGGTCACGCCGCGCCAACCCCTGCCGTACATGGCCAC 50272 || ||||| | ||| | || | || ||| ||| || | || ||||| || || Sbjct 281359 GAAAGGATTACCATCTGTATAATTGTGTACTCCGGTCCACCCACGTCCATACATTGCAAC 281300 Query 50273 GCCTACGATTATTTTGCTCGGCTGCACGTTTTGATCGAGAAGAACGTTTACCGCAAAATC 50332 ||||||| ||||| |||| | || |||| | | || | || | || || Sbjct 281299 ACCTACGACAATTTTCTTCGGGTTTACACCTTGAGCCAATAGGTACTGAACACCGAAGTC 281240 Query 50333 GGTCGTGTACTTTTCGTCGGTGTTCCATGCGGGCGCATACAAAGGCGTCTGATGTCCCAA 50392 || || || |||| | | |||||| |||| ||||||| | || ||||| || || Sbjct 281239 TGTGGTATAAGTTTCCTTTGAGTTCCACTCGGGAGCATACAGTGCGGTTTGATGACCTAA 281180 Query 50393 ATCGACGGTGGACCAAGCGCCTTTAAAATCGTAACTCATTAAAAATATTTTATCTAAATA 50452 | |||||||||| || ||||| ||||| ||||| | ||| || | || | || Sbjct 281179 TGTATCATTGGACCAAGCACCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTA 281120 Query 50453 ATTTTGAGCGTCGCCGTAATTGACAAGGGCGATTTTATCGTAACCTGCGCTAACGGCGCT 50512 ||| || || | ||| | |||| |||||| || | || || |||| || Sbjct 281119 ATTCTGCGCAGCTTTGTAGTCTACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGA 281060 Query 50513 CGTCAATTCGAA-TTCGCGGCCGGTGACGCGTTGAAGA--TCGTCCAGCATGTCGCGCAG 50569 || |||||| | ||| | || | | ||| | | |||| ||||| || || || Sbjct 281059 TGTTAATTCGTACTTCTTGCCCATTT---CATTGGATAATTCGTTAAGCATTTCTCGAAG 281003 Query 50570 ATCGCGAAGCAGCACAACGTACGTGAGTCCGTCTTTGTGAGGATCGCCGACTGCGGGATT 50629 || | | | ||| || || | | | | | |||| | || | || || || Sbjct 281002 CTCCTTCATTAATAAAACATA---GACTTCACCATCCTTAGGACCACCAAGTGTCGGGTT 280946 Query 50630 GGCGCCGTTGCCGCCGGGAAACTCCCAATCGATGTCGACGCCGTCGAAAAACTTCCAAGT 50689 ||||| || || || || || ||||| || ||||| || || |||||||| ||||| || Sbjct 280945 TGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGT 280886 Query 50690 CAGCAGAAACTCGCGTACCGATTCCACAAAAACGGCTCGTTTTTCCGCGTCGTGCATGTG 50749 | || || || ||| || || | ||| |||| ||| || ||| | | | Sbjct 280885 TTGAAGGAAGTCTTTTACAGAGTCAATGAAACGCGCTCTCTTTACCTTGTCATCGAAGAA 280826 Query 50750 AAAAAATGGATCGGACAACGTCCATCCGCCTATAGACGGTAACACCTTGAGGTGCGGGTT 50809 || |||||||| | | ||||| ||||| ||||| || | | ||| || | || | Sbjct 280825 GAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCT 280766 Query 50810 GGCtttttttATCGCCATCAGTTGACCGAAATTTCCTTTGTACGGTTCGTTCCAAGCCGA 50869 |||| ||||| | ||||| || || || || |||||||| ||||| ||||| | || Sbjct 280765 TGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGA 280706 Query 50870 GACGCCCTTTTGTGGTTTCTGTACCGCAGCCCACGGGTCGTGAATGGACACTTTAAAATC 50929 | || ||||||||||| |||| |||||||| |||||||||||||| |||||||| || Sbjct 280705 AAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTC 280646 Query 50930 GGCTCGGCCGGCGCACGAACGCTGCAGCGCCTCGAAACTGCCCGTGACGGTTTTCAACGC 50989 ||||||| ||| || | ||| | ||| | |||||| ||| | |||||| Sbjct 280645 TTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCAAACT 280586 Query 50990 GTCGTTGACGCCTTCGCCGCCGCAAATCGGCACGAAACCGTACAGCAAATGCGACAAATT 51049 |||||||| || || || || |||||||| | |||||||||| | ||| | ||||| Sbjct 280585 GTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATT 280526 Query 51050 GGGGGCAGGAATTTTGTCAGCGGCGAACGCACGCGCGTACACTCCCCATTCTACAAAATA 51109 ||| || || ||| ||| || | | || ||||||||||| ||||| || Sbjct 280525 CGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTA 280466 Query 51110 CGC 51112 || Sbjct 280465 AGC 280463 >seq401 Length=384550 Score = 183 bits (202), Expect = 3e-41 Identities = 876/1382 (63%), Gaps = 13/1382 (1%) Strand=Plus/Minus Query 123303 GCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAAC 123362 || || ||| ||||||| ||||| | |||| | | || |||||| | ||||| || Sbjct 358146 GCTATTTATTTAGAACCATGGCATGCTGATATTTTTGAATTTTTAGACCTAAAAAAGAAT 358087 Query 123363 ATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTG 123422 | ||| |||||| | ||| | || | || || ||| | ||| | || ||||| Sbjct 358086 ACAGGGAAAGAAGAAGTGCGTGCCAGAGAGCTTTTCTATGCTCTTTGGATTCCTGATTTA 358027 Query 123423 TTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCC 123482 || ||| | ||| || | ||| ||| ||||||||||| | | ||| Sbjct 358026 TTCATGAAGAGAGTAGAAAAGAACGAAAATTGGAGTCTCATGTGTCCTCACAATTCTCCT 357967 Query 123483 GGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGC--GCG 123540 ||| | ||| | || | | ||||| ||||||| | ||||| || | | | Sbjct 357966 GGCCTCGCTGACTGCTGGGGAGAAGAATTTGAGAAGTTGTATGAACAATATGAACAAGAG 357907 Query 123541 AAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACAC 123600 ||| || | |||| || |||| |||| ||| | ||| ||| || || ||| Sbjct 357906 AAG--AAGTATGTTAAACAAGTTCGTGCACAAATTTTATGGAAAGCTATAATTGAGGCAC 357849 Query 123601 AAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATC 123660 |||| || || ||||| || | ||||| || |||||| | || ||||| |||| ||||| Sbjct 357848 AAGTAGAGACTGGAACACCATTTATGCTGTATAAAGACTCATGTAACAGAAAAAGCAATC 357789 Query 123661 AGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCG 123720 | ||| | || ||||| |||||||| ||||| ||| | |||||| | ||||||| | Sbjct 357788 AACAAAACCTTGGCACAATTAAATGTAGCAATCTCTGCACAGAAATTGTAGAATACACCT 357729 Query 123721 ATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTC---G 123777 | ||| ||||||| || |||||||| || || || | || | ||| | Sbjct 357728 CGGAAGATGAAGTGGCTGTCTGTAATTTAGCATCAATAGCTCTCAACATGTTTGTCAATG 357669 Query 123778 AAAACGGCGCTTTTAATTTCCAAACGCTCAAACGCA-TAACAAAAACTGTAGTAAAGAAT 123836 || || ||| ||||| ||| | | ||| | | | || ||||| | | ||| Sbjct 357668 AAGACAAAACTTACAATTTTGAAAAGTT-AAAGGAAGTCACTAAAACAATTACCCAAAAT 357610 Query 123837 TTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTG 123896 || ||||||||||| ||||| |||| ||||| | ||||| || || || Sbjct 357609 TTAAACAAAATTATTGATGTGAATTACTATCCAGTTCCAGAAGCTAAAAATTCAAACATG 357550 Query 123897 AAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGC 123956 | ||||||||| | || | || ||||||| ||||| || | || || | |||| Sbjct 357549 AGACACAGACCAATTGGGATTGGTGTTCAAGGTTTGGCTGATACATTCGTTTTAATGCGT 357490 Query 123957 ATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTAT 124016 || || ||||| || | |||| | ||| |||||| || || |||||| Sbjct 357489 TATCCATATGAAAGTGAAAATGCAATTAAATTAAATCAACAAATATTTGAGACTATTTAT 357430 Query 124017 TACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTAC 124076 || || || || || || ||||| ||| | || ||| | || | ||| | | Sbjct 357429 TATGGAGCCTTAGAAGCAAGCTGTGAATTAGCAGAAAAAGAAGGTGTATACAGTACCTTT 357370 Query 124077 GCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACA 124136 ||||| | || ||||||||||| || || ||||||||| | ||| || Sbjct 357369 AAAAATAGCCCTGTCAGTAATGGTATTTTGCAATATGATATGTGGAATAAAATACCTACG 357310 Query 124137 AATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCG 124196 | | ||| | ||| | | ||||| | || || | ||||| | |||||||| Sbjct 357309 GACCTTTGGAATTGGGTTGCTCTAAAAGAGAAAATTTCTAAACACGGGCTTCGTAACTCT 357250 Query 124197 CTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCC 124256 || | | ||| ||||| || ||| |||| || |||||| | ||||| || |||||| Sbjct 357249 TTGCTTTTAGCGCCTATGCCTACCGCATCCACAGCACAAATTCTTGGAAATAATGAATCC 357190 Query 124257 TTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTG 124316 || || || || || || | || | || |||| || | || || |||||||| Sbjct 357189 TTTGAACCTTTTACATCAAACATATATCAGAGAAGAGTTTTGTCAGGAGAATTTCAAGTA 357130 Query 124317 ATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGC 124376 | || |||||| | || | || || | | || | | |||||| ||||| Sbjct 357129 GTGAACCATCATCTTTTGAAAGATTTAACGCAAGCAGATCTATGGGATGAAGACATGAAA 357070 Query 124377 AACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTC 124436 ||| || ||| | ||| | || |||| ||||| || | | Sbjct 357069 AACCTTATCATTCATAACAATGGTTCAATTCAAAATATCGAAAGAATTCCAAAAGAAAT- 357011 Query 124437 AAGCAACTG-TACAAAACCGTGTGGGAAATGAAAAATAAA-CGATTAATTGAAATGGCCG 124494 | | ||| |||||||| || |||||||| | |||| ||| | | ||||||| | Sbjct 357010 ACGAGACTTATACAAAACAGTCTGGGAAATTTCAGTTAAAACGACGA-TCCAAATGGCAG 356952 Query 124495 TCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCA 124554 || | ||||| | | |||||||| || |||||||| | ||| || ||||| | Sbjct 356951 CTGATAGGGGCGCATTTATTGATCAAAGCCAGTCTTTTAATATTCATGTTGCTGAACCAA 356892 Query 124555 CCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCA 124614 || | |||| || || | || || |||| | || || ||||| || | Sbjct 356891 ATTATGGAAAATTGACATCTATTCATTTTCATGCATGGAAAATGGGGCTTAAAACTGGAA 356832 Query 124615 TGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAATCTA 124674 ||||||| || | || ||||| || ||| |||||||||||||||| || |||||||| | Sbjct 356831 TGTATTATTTGCGCACAAAACCAGCTGCCAATGCCATTCAATTTACGGTTGACAAATCAA 356772 Query 124675 AA 124676 || Sbjct 356771 AA 356770 >seq53 Length=2198565 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | ||||| ||||| || |||||||||||||| || || || || Sbjct 1830987 ATTCCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCT 1830928 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || ||||| || | || | ||||||||||| || Sbjct 1830927 GAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGT 1830868 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || ||||||||||| ||||| ||| | |||||| || | || Sbjct 1830867 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCC 1830808 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | |||||||| || || ||||| || ||||||||||| Sbjct 1830807 ACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGT 45189 || ||||||| |||||||||||||| || || || || |||| | || | ||| | Sbjct 1831194 ACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTC--TGACAGCGTTCGGCCATCTT 1831137 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||||||| ||||| ||| | || | ||||||||||| || ||||| ||||| || |||| Sbjct 1831136 CCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCTT 1831077 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | ||||| ||| | ||| | |||||| |||| || || || | || | |||| Sbjct 1831076 GGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTTT 1831017 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| |||||||||||||| Sbjct 1831016 TTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | ||||| ||||| || ||||| |||||||| || || || || Sbjct 1830759 ATTCCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCT 1830700 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || ||||| || | || | ||||||||||| || Sbjct 1830699 GAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGT 1830640 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || ||||| ||| | ||| | |||||| |||| || Sbjct 1830639 GGAATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCA 1830580 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | || | ||||| || || ||||||||||| || || ||||| Sbjct 1830579 ACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 >seq429 Length=186180 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||| || ||||||||||| | || || || |||||||| ||||| ||||| ||| Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | |||||| || ||| | ||||| || || ||||| || || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || ||||| || || || || | ||| | |||||||| | ||| || Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || || || || || ||||| ||||| || ||||| Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCAT 15486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451961683506080