Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq401 120 4e-22 >seq401 Length=384550 Score = 120 bits (132), Expect = 4e-22 Identities = 258/383 (67%), Gaps = 11/383 (3%) Strand=Plus/Plus Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 |||| ||| ||| || | |||||| ||||| | |||||||| | |||||||| || Sbjct 357497 AAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGTCTCATGTTT 357556 Query 116296 GACTTTCGAGCGGTCTCCA-CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 || ||| ||| ||| | | ||||| ||||| ||| |||| | |||| ||||| Sbjct 357557 GAATTTTTAGCT-TCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTTAAATTTTG 357615 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT---CTTC 116411 ||| | || |||| ||| | | |||||| |||| || ||| | |||| Sbjct 357616 GGTAATTGTTTTAGTGACTTCCTTTAACTTTTC------AAAATTGTAAGTTTTGTCTTC 357669 Query 116412 ATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 ||||||| || | || || ||||| || | |||||| |||| ||||| | Sbjct 357670 ATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCATCTTCCGA 357729 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 ||||| |||| |||||| || || | ||| || ||||| ||||| | ||| | ||| Sbjct 357730 GGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTGTTG 357789 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 ||| ||| ||||||| | || || || |||||| |||| || || ||||| ||| Sbjct 357790 ATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCTACTTG 357849 Query 116592 GGACTTGAGAATAGCCTTCCATA 116614 | || | ||||| ||||||| Sbjct 357850 TGCCTCAATTATAGCTTTCCATA 357872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613450849363680