Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq53 134 3e-26 seq429 118 2e-21 >seq53 Length=2198565 Score = 134 bits (148), Expect = 3e-26 Identities = 162/217 (75%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || || || ||||||||||| | ||||||||| | | || | ||||||||| Sbjct 1830738 ACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCC 1830679 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||||||||| || ||||||||||| |||||||| || ||| ||||| ||||| Sbjct 1830678 AACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGG 1830619 Query 199541 ATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 || ||| || || || ||| | |||||||| | ||| || || || ||||| || || Sbjct 1830618 AT-TTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTT 1830560 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTTA 199636 ||||| |||||||| || || || || ||||||| Sbjct 1830559 TCCCGTAAGAGTTTTTACGAAGATCTG---CATTTTA 1830526 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || | || || |||||||| | ||||||||| | || || | |||||| Sbjct 1831197 AGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCT 1831138 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||||| |||||||| ||||| |||||||| || ||| ||||| || Sbjct 1831137 TCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCT 1831078 Query 199538 TGAATCTTTTGCTTCA-CGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| |||| | | ||| | |||||||| | ||| || ||||| ||||| || Sbjct 1831077 TGGAT-TTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGT 1831019 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||| ||||||||||| Sbjct 1831018 TTTTCCTGTCAGTGTTTTAACAAAAATTTG 1830989 Score = 123 bits (136), Expect = 6e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || || || || |||||||| | ||||||||| | | || | ||||||||| Sbjct 1830966 ACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCC 1830907 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||||||||| || ||||||||||| |||||||| || ||| ||||| || ||| Sbjct 1830906 AACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGA 1830847 Query 199541 ATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 || ||| || || || ||| | |||||| | | ||| || || | ||||| || || Sbjct 1830846 AT-TTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTTT 1830788 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || |||||||| Sbjct 1830787 GCCTGTGAGTGTTTTAACGAAAATTTG 1830761 >seq429 Length=186180 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| |||| || | ||| || || || ||||| |||| ||| ||||| | || || Sbjct 15706 CGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGACAGGGTA 15647 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || ||||| || | |||||| ||||| || ||||| Sbjct 15646 CGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGGATTCCC 15587 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| ||||| ||||| | | || || || | Sbjct 15586 TCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACCTCTAGG 15527 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||||||||| ||||||||||| || || Sbjct 15526 GTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTG 15489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178810608952316