Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq326 201 1e-46 seq53 109 6e-19 >seq326 Length=503882 Score = 201 bits (222), Expect = 1e-46 Identities = 791/1227 (64%), Gaps = 58/1227 (5%) Strand=Plus/Plus Query 98743 GGGGCTTATTTTGTAGAATGGGGTGTTTACGATCGCAAATTTCCAGCAGATAAAGTGCCT 98802 || ||||| ||||| |||||||| ||||| | | || | ||| | || | || Sbjct 280460 GGTGCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCA 280519 Query 98803 ATCCCCAATTTGACACACCTTTTGTATGGTTTTATCCCCATTTGCGGAGGCGACGGTATA 98862 ||||| ||||| || || |||||||| ||||||||||| ||||| || || || || || Sbjct 280520 ATCCCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATC 280579 Query 98863 AACGACAGTCTAAAACAAGTGCCGGGATCTTTTGAGACGTTACAAAAATCGTGCGATAAG 98922 ||||||||| | ||| || | |||| ||| | ||||||| | ||| ||| | Sbjct 280580 AACGACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGC 280639 Query 98923 AGAGATGATTTCAAGGTGAGCATCCACGATATTTACGGTGCTCTACAGAAACCACAACAG 98982 |||| || || || || ||| ||||| | | ||| |||| ||||||||| | Sbjct 280640 CGAGAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAA 280699 Query 98983 GGTGTCTCCGATTATAACGAGCCTTACCGTGGCAATTTCGGACAGCTTATGGCCATACGT 99042 || | || | || || || ||| ||||| || || ||| | ||| | || Sbjct 280700 GGACTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTA--- 280756 Query 99043 AAACA--CAA-CCCACATCTAAAAATCCTACCCAGTATCGGTGGTTGGACTCTTAGCGAC 99099 ||||| ||| || ||||||| || || || ||| || |||||||| || || Sbjct 280757 AAACAAGCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGAT 280816 Query 99100 CCCTTCTATTTTTTCGCCGATGATTACAAGCGCAAAGTG-------TTCGTAGACTCGGT 99152 || |||| || ||| ||| ||||| | |||| | ||| | ||||| || Sbjct 280817 CCATTCTTCTTCTTC------GATGACAAG-GTAAAGAGAGCGCGTTTCATTGACTCTGT 280869 Query 99153 TCGTGAATTCCTACAGGTGTGGAAATTTTTCGACGGTGTAGACATCGACTGGGAGTTTCC 99212 || ||||| || |||||||||||||| ||||||||||| |||||||| || || Sbjct 280870 AAAAGACTTCCTTCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCC 280929 Query 99213 TGGCGGAAAGGGGGCCAACCCTGAAGTAGGAAATCCTAATGAGGACGGAAACACTTATGT 99272 ||| || ||||| || ||||| | | || ||||| |||| || | ||||| Sbjct 280930 TGGAGGTAAGGGCGCAAACCCGACACTTGGTGGTCCTA---AGGATGGTGAAGTCTATGT 280986 Query 99273 CACACTTCTGCAAGAGCTTCGTTTGATGCTTGACGAATTGGGTGTGGCCAAT-AAACGTG 99331 | | || | |||||||| |||||| |||||| | ||||| ||| | | Sbjct 280987 TTTATTAATGAAGGAGCTTCGAGAAATGCTTAACGAAT------TATCCAATGAAATGGG 281040 Query 99332 -----TTTACGAACTGACAAGTGCCGTGGGCGCCGGTTACGATAAAATCGACGTGGTCGA 99386 |||||| | ||| || | | || || | || |||||| | || || || Sbjct 281041 CAAGAAGTACGAATTAACATCAGCTATTAGTGCTGGATGGGACAAAATCCAAGTTGTAGA 281100 Query 99387 TTACTCTACAGC-CAGTCAATATTTGGACCATGTGTTTTTAATGAGTTACGATTTTAAAG 99445 ||| | || ||| | || |||||||| | ||| | ||||| ||||| ||||| | Sbjct 281101 CTACAAAGCTGCGCAG-AATTACATGGACCATATTTTTGTTATGAGCTACGACTTTAAGG 281159 Query 99446 GCGCCTGGTCCAACACCGACTTGGGTCATCAAACACCATTGTATGCACCATCGTGGAACT 99505 | || |||||||| || ||||||||||| || ||||||| || |||||||| Sbjct 281160 GTGCTTGGTCCAATGATACATTAGGTCATCAAACCGCACTGTATGCTCCCGAGTGGAACT 281219 Query 99506 CCGAAGAGAGATACACAACCGATTATGCGGTTAAACAGCTATTAAAGAAAAAAGTGCCTT 99565 | | || | || || || || | | ||| | | ||||| | || ||| Sbjct 281220 CAAAGGAAACTTATACCACAGACTTCGGTGTTCAGTACCTATT--GGCTCAAGGTGTAAA 281277 Query 99566 CTC--ACAAGATTGTAGTGGGAGTCGCCATGTACGGCAGAGGATGGAGTGGAGTGCATGA 99623 | | | || ||||| || || || || ||||| || | || |||| ||||| || | Sbjct 281278 CCCGAAGAAAATTGTCGTAGGTGTTGCAATGTATGGACGTGGGTGGACCGGAGTACACAA 281337 Query 99624 CTACAAAAATAATAACGTTTTTACGGGTGTGGCCACGGGACCGGTAAAAGGCACCTGGGA 99683 || | | || ||| ||| ||||| | || || ||||| || ||||| ||| | Sbjct 281338 TTATACAGATGGTAATCCTTTCACGGGGATCGCAACAGGACCTTGCAAGGGCACATGGCA 281397 Query 99684 AAACGGTGTTGTTGATTATAG-------GCAGGTCGAAGAGCTCAAAAACAACAATTACA 99736 | ||||| || ||||| || ||| | | | |||| |||||| ||| | Sbjct 281398 GGATGGTGTGGTCGATTACAGGGAAATTGCAAATGGCATTGCTC-AAAACA--AATGGGA 281454 Query 99737 CATACGCATACGACAAAGTGGCCGAGGCGGCATATATTTACGGTGGCGCCGACCAGGCGT 99796 | | | ||||| || || ||| | || || ||| | | | | | | |||| Sbjct 281455 GTTCCAC-TACGATAACGTTGCCCAAGCTGCTTATGTGTTC-AAACCATCTA-CAGG--- 281508 Query 99797 TGAATTTAATTTCTTACGACGACTCATCGTCTGTACTAGCAAAAGGTAATTACGTTTTAC 99856 ||| || || | |||||| || | || || | |||||||| ||||| | Sbjct 281509 GGAACTT-GTTACATACGACAACGCGAGATCCGTTACCGAGAAAGGTAAATACGTAAGAA 281567 Query 99857 AAAACAATCTCGGAGGTTTATTTGCTTGGGAAATCGATGCCGACAACGGTGACTTGTTAA 99916 | || | || || ||||| || || |||||||| || || || ||||||||| | || | Sbjct 281568 AGAATTACCTAGGTGGTTTGTTCGCGTGGGAAATAGACGCAGATAACGGTGACATATTGA 281627 Query 99917 ACGCCATGAACACAGGTTTGGGTAACA 99943 |||| ||||||| | | | ||||||| Sbjct 281628 ACGCAATGAACATGGCTCTAGGTAACA 281654 >seq53 Length=2198565 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| | ||| ||||| ||||| | ||| ||||||||| || |||||||| || Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || | |||||| || || || || | || |||||||| | || Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| ||| || || | | | | ||||| | ||| || Sbjct 1830636 ATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACT 1830577 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || | ||||||||||| ||||| || ||||| || ||||| |||||||| Sbjct 1830576 TCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTT 1830527 Score = 102 bits (112), Expect = 9e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 46364 TTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCG 46423 ||||| ||||| | ||| | || |||||||| || |||||||| || |||||||| Sbjct 1831215 TTGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCT 1831156 Query 46424 GATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCC 46483 || || || || | || || | ||||| || ||||| || | || |||||||| | Sbjct 1831155 GACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGT 1831096 Query 46484 GGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCC 46543 || | | |||||||| ||| || || | | | | ||||| | ||| Sbjct 1831095 GGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCA 1831036 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| ||||||||||| || ||||| ||||||||||| ||||||||| Sbjct 1831035 ACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | ||| ||||| ||||| | ||| |||||||| || |||||||| || Sbjct 1830984 CCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAA 1830925 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || | |||||| || || || || | || |||||||| | || Sbjct 1830924 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830865 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||||| || || |||| | | | ||||| | |||||| Sbjct 1830864 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACT 1830805 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | |||||||||||||| || || |||||||| || ||||||||| Sbjct 1830804 TCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565186482852960