Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq326 273 2e-68 >seq326 Length=503882 Score = 273 bits (302), Expect = 2e-68 Identities = 794/1205 (66%), Gaps = 38/1205 (3%) Strand=Plus/Minus Query 5830 TGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCCACGCAAATAAACCAC 5889 |||||||||| || || | |||||||| || ||||||||||||||||| || ||||||| Sbjct 281639 TGTTCATTGCGTTCAATATGTCACCGTTATCTGCGTCTATTTCCCACGCGAACAAACCAC 281580 Query 5890 CCA---AATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATTGATCGTTGTCGT 5946 | | |||| || || ||| || |||||||| | || ||| ||||||||| Sbjct 281579 CTAGGTAATTCTTTCT---TACGTATTTACCTTTCTCGGTAACGGATCTCGCGTTGTCGT 281523 Query 5947 ACGTAACTAAATCATTATTA------TCGTAGACGTACGGAGATTGTGCAATGTTATCAT 6000 | ||||| | || || | | | || || | || ||| |||| |||||| | Sbjct 281522 ATGTAACAAGTTCCCCTGTAGATGGTTTGAACACATAAGCAGCTTGGGCAACGTTATCGT 281463 Query 6001 AG---AATTGTACACTTTCGTCGTAC----CTATTTACAATATCTTTATAATCGATTACG 6053 || || | || || | | | | |||| |||| || | ||||||| || Sbjct 281462 AGTGGAACTCC-CATTTGTTTTGAGCAATGCCATTTGCAATTTCCCTGTAATCGACCACA 281404 Query 6054 CCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAACGGATTATTGTTT 6113 || | |||||| || || || | | || || || || || |||||| | | Sbjct 281403 CCATCCTGCCATGTGCCCTTGCAAGGTCCTGTTGCGATCCCCGTGAAAGGATTACCATCT 281344 Query 6114 -TCGACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACCTACTACTAATTT 6172 | | | | || || ||| |||| || ||||||||||| || |||||||| || | ||| Sbjct 281343 GTATAATTG-TGTACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAATTTT 281285 Query 6173 AGTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGTTGTGTAATTTTC 6232 ||| | ||| |||| || | | || | | || | || || ||| |||| Sbjct 281284 CTTCGGGTTTACACCTTGAGCCAATAGGTACTGAACACCGAAGTCTGTGGTATAAGTTTC 281225 Query 6233 GTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATTTTCCATGGACCA 6292 || || |||| ||||| || || | |||||| ||| || | || ||||||| Sbjct 281224 CTTTGAGTTCCACTCGGGAGCATACAGTGCGGTTTGATGACCTAATGTATCATTGGACCA 281165 Query 6293 AGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCGTTGCGCGTCTGT 6352 ||| || ||||| |||||| |||| ||||| |||| || | || ||||| || | Sbjct 281164 AGCACCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCGCAGCTTT 281105 Query 6353 ATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGCGCTAGTTAGTT-GCAATC 6411 || || ||||| | ||||||||| | || |||| ||||| |||| || | | | Sbjct 281104 GTAGTCTACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATTCGTACTT 281045 Query 6412 GTTTACC-TCTCtttttttCCAATTTGTTGAGCATTTCGCGTAACTCCTTTAAAAGTATT 6470 || || | || || | |||| ||| |||||||| || | |||||| | | || Sbjct 281044 CTTGCCCATTTCATTGGAT--AATTCGTTAAGCATTTCTCGAAGCTCCTTCATTAATAAA 280987 Query 6471 GTATATGTTTTGCGATCCACTGAAGCGTTGCCCAGCGACGGGTTGGCACCTTTACCGCCC 6530 ||| || | |||| | | | || || | |||||| || || ||||| || Sbjct 280986 ACATAGACTTCACCATCCTTAGGACCA---CCAAGTGTCGGGTTTGCGCCCTTACCTCCA 280930 Query 6531 GGAAACTCCCAATCTATGTCGACGCCGTCGAAAAATTTCCACGTTTCCAAAAATTCGCGC 6590 || || ||||| |||||||| || || |||||||||||||| |||| | || || Sbjct 280929 GGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTGAAGGAAGTCTTTT 280870 Query 6591 ACACTATCAAC-AAACGTATTTCGTTTTTCGACGTCGTTTAACTGGTAAAACGGATCGCT 6649 ||| |||| ||||| | | ||| | ||| | || | | || ||||| Sbjct 280869 ACAGAGTCAATGAAACGCGCT-CTCTTTACCTTGTCATCGAAGAAGAAGAATGGATCAGC 280811 Query 6650 AAGCGTCCATCCGCCTATCGATGGCAATATTGTTAAATCTGGATTGTGGC--GCTTGATC 6707 || ||||| ||||| || || || | || ||| ||| || | | || | || | Sbjct 280810 GAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGG--TCTTGCTTGTTTTAAA 280753 Query 6708 GCCATTAACTGTCCAAAGTTTCCTTTGTACGGTTCGTTGTAGGCCTCGACACCTTTTTGT 6767 | ||| ||||| |||||||| |||||||| ||||| || ||| | ||||||||| Sbjct 280752 GACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTCCTTTTTGT 280693 Query 6768 GGTTTTTGAAGCGCTCCCCATATATCATGAATGGTTACTTTGAAATCTTTTCGGCCGGCG 6827 |||||||| | || |||| || ||||||| |||||| || |||| |||||| | Sbjct 280692 GGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTCGGCCACTG 280633 Query 6828 CACGATTTTTGCAACGCCTCAAACGAACTGGGTATTTGTTGTTTAAGCGCATCGTTTACA 6887 || ||| | || ||||| | || | |||| || | || | ||||| | Sbjct 280632 CAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTT--TCAAACTG-TCGTTGATT 280576 Query 6888 CCATCGCCGCCACAAATTGGTATAAACCCGTACAACAAATGTGTAAGATTAGGAATGGGA 6947 ||||| || |||||||| || ||||| |||||||| | ||| || | ||| || || || Sbjct 280575 CCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGGGATTGGT 280516 Query 6948 ATTTTGTCGGCGGGATATTGTCTATCGTAAACACCCCATTCCACAAAGTAAGCGCCCACA 7007 || ||| ||||||| | |||| ||||| |||||||| ||||||||||| || ||| Sbjct 280515 ATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAGCACCAACA 280456 Query 7008 ACATT 7012 || || Sbjct 280455 ACCTT 280451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347338491749684