Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq53 136 4e-27 seq429 134 1e-26 seq326 123 2e-23 seq183 107 2e-18 >seq53 Length=2198565 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| ||||||||||||||| | || || || ||| | Sbjct 1830757 AATGCAAATTTTCGTTAAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTC 1830816 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| | |||| ||||| | ||||| || || ||||| | ||||| Sbjct 1830817 TGACACCATTGAAAATGTCAAAGCTAAAATTCAAGACAAGGAAGGTATTCCACCAGACCA 1830876 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || || || ||| |||| || | |||||||| |||||||| Sbjct 1830877 GCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAA 1830936 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||||||| | || || ||| | ||| | ||| | || || || Sbjct 1830937 CATTCAAAAGGAATCAACACTTCATCTTGTGTTACGTCTCAGGGGAGG 1830984 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||||||||| || ||||| ||||||||||| | || || || | Sbjct 1830527 AAAATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAACCT 1830586 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| |||||| ||||||| ||||| || || ||||| | ||| Sbjct 1830587 TCAGACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCACCAGAC 1830646 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || ||||| | || || || ||| |||| || | |||||||| |||||| Sbjct 1830647 CAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTAC 1830706 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||||| | || || ||| | ||| | ||| | ||||| || Sbjct 1830707 AACATTCAAAAGGAGTCAACACTTCATCTTGTGTTACGTCTCAGAGGAGG 1830756 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || ||||| || || || ||||||||||| | || || || | | Sbjct 1830985 AATGCAAATTTTTGTTAAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTC 1831044 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||| |||||| ||||||| ||||| || || ||||| | ||||| Sbjct 1831045 AGACACCATTGAAAATGTTAAAGCTAAAATCCAAGACAAGGAAGGTATTCCACCTGACCA 1831104 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | ||| || || || |||| || | || || || |||||||| Sbjct 1831105 GCAACGTCTTATCTTCGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTACAA 1831164 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| ||||||||| | || ||||| | || || ||| ||||||| ||| Sbjct 1831165 CATTCAAAAGGAATCAACCTTGCATCTTGTACTCCGTCTGAGAGGTGGC 1831213 >seq429 Length=186180 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || ||||| |||||||| || ||||||||| | || || ||||| Sbjct 15482 AAACATGCAGATCTTTGTGAAAACCCTCACGGGTAAGACCATCACCCTAGAGGTGGAGGC 15541 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||||| | ||| | || | || |||| || || |||||||| || | || Sbjct 15542 CTCCGACACTATCGAAAATGTGAAGGCCAAGATCCAGGATAAGGAGGGAATCCCACCTGA 15601 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| | |||| ||| || ||||| || || || | ||| ||||| |||||| Sbjct 15602 CCAACAGCGTTTGATTTTCGCTGGTAAACAACTTGAAGATGGGCGTACCCTGTCCGACTA 15661 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||||| |||||| | || || || |||||| || Sbjct 15662 TAACATCCAGAAGGAATCTACACTACACTTGGTGTTG 15698 >seq326 Length=503882 Score = 123 bits (136), Expect = 2e-23 Identities = 338/514 (66%), Gaps = 4/514 (1%) Strand=Plus/Minus Query 62211 CGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTT 62270 |||||| |||||||| || || || || |||||||| | ||| | || ||||| | || Sbjct 280951 CGGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTT 280892 Query 62271 CCACGTCTGCAGAAACTCGCGCGCCGACTCGACGAACGCGCGCCGCGCGTTCGC--GTCG 62328 ||| || || || || || | || || | ||| ||||| | | || | ||| Sbjct 280891 CCAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAA-CGCGCT-CTCTTTACCTTGTCA 280834 Query 62329 TGCATATGGTAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGG 62388 | | | | || ||||| | |||||||| ||||| || || || || | || Sbjct 280833 TCGAAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGA 280774 Query 62389 TGCGGGTGCGCTTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTC 62448 | || |||| || | | ||||| |||||| |||||||| ||||| || || || Sbjct 280773 TCAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTC 280714 Query 62449 CACGCGGTCACGCCCTTTTGCGGCTTTTGCACGGCCGCCCACGGGTCGTGCACCGCCAGT 62508 || | | | || ||||| || ||||| | ||| ||||| |||||||| | | | | Sbjct 280713 CAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACT 280654 Query 62509 TTGAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGAC 62568 || ||||| || ||||| ||| || | ||| | ||| | ||| || ||| | || Sbjct 280653 TTAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCT 280594 Query 62569 TTGAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGC 62628 || | ||||||||||| || || || || || ||||| | || ||||||| ||||| Sbjct 280593 TTCAAACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGA 280534 Query 62629 GTGAGGTTGGGCACGGGCACCTTGTCGGCGGGAAACTCGCGTCCGTACACGCCCCACTCG 62688 || | || || | || | ||| ||||| ||| | || || ||||| || Sbjct 280533 GTTAAATTCGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCA 280474 Query 62689 ACGAAATAGGCGCCCACCACCTTGCCGGTCGGCT 62722 || || || || || || ||||| || | || || Sbjct 280473 ACAAAGTAAGCACCAACAACCTTTCCAGACGTCT 280440 >seq183 Length=738700 Score = 107 bits (118), Expect = 2e-18 Identities = 139/191 (73%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| ||||| ||||| | ||| |||||||| || | ||| ||||| || || | |||| Sbjct 171511 CCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTT 171452 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| | || ||||| || || ||||| | ||||| || || || || | Sbjct 171451 TCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATG 171392 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | | || || || || || |||||| || ||||| | || ||||| || | Sbjct 171391 CTACAATTCTTTCACCAAATGTAGCAGATTTGCTTGCTATCCACTGGAGAGCCCAATCTG 171332 Query 133097 CCTT-TTCTTT 133106 |||| |||||| Sbjct 171331 CCTTCTTCTTT 171321 Score = 96.9 bits (106), Expect = 3e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| || || ||||| ||||||||||| || ||||| || ||||| || || ||||| Sbjct 171071 GTATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAA 171012 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||| || || || | || || || || || ||||| | ||| | || |||||||| Sbjct 171011 GCCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATT 170952 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||| ||||| ||||| || || || || || |||| || ||||| ||||| || | Sbjct 170951 TTCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAAGTGCCT 170892 Query 133347 CTC 133349 ||| Sbjct 170891 CTC 170889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500126859128320