Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq401 172 7e-38 >seq401 Length=384550 Score = 172 bits (190), Expect = 7e-38 Identities = 609/930 (65%), Gaps = 30/930 (3%) Strand=Plus/Minus Query 112082 GTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 ||||| | || || |||| ||||| |||||||| ||| | |||||||||||||| || Sbjct 358067 GTGCCAGAGAGCTTTTCTATGCTCTTTGGATTCCTGATTTATTCATGAAGAGAGTAGAAA 358008 Query 112141 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGA-TGCCGTG 112199 ||| | |||||| |||| | ||||| |||| | || || ||| | || ||| | | Sbjct 358007 AGAACGAAAATTGGAGTCTCATGTGTCCTCACAATTCTCCTGGCCTCGCTGACTGCTG-G 357949 Query 112200 GGTGAGGAGTTTGA--AGCCCTCTACACAAAGT--ACGAG-GAAGAAAGTCGGGCGACTG 112254 || || || ||||| || | | |||| | || || |||||| || | | Sbjct 357948 GGAGAAGAATTTGAGAAGTTGTATGAACAATATGAACAAGAGAAGAA-GTATGTTAAACA 357890 Query 112255 CGACGGTGC-CAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 112313 | |||| || | | | ||||||||||| | || | ||| |||||||| Sbjct 357889 AGTTCGTGCACAAAT-----TTTATGGAAAGCTATAATTGAGGCACAAGTAGAGACTGGA 357835 Query 112314 ACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGT 112373 ||||||| |||||| || |||||| | |||||| ||| || |||||| | || | || Sbjct 357834 ACACCATTTATGCTGTATAAAGACTCATGTAACAGAAAAAGCAATCAACAAAACCTTGGC 357775 Query 112374 GTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACG 112433 || || || ||| ||||| |||||||| | |||| || ||||||| | Sbjct 357774 ACAATTAAATGTAGCAATCTCTGCACAGAAATTGTAGAATACACCTCGGAAGATGAAGTG 357715 Query 112434 GCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACA 112493 ||||| ||||| | |||||||| |||||| || || ||| || ||||||| || Sbjct 357714 GCTGTCTGTAATTTAGCATCAATAGCTCTCAACATGTTTGTCAAT--GAAGACAAA-ACT 357658 Query 112494 TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTT 112553 | ||| |||||| | | ||||| || ||||| | || |||| |||||| | || Sbjct 357657 TACAATTTTGAAAAGTTAAAGGAAGTCACTAAAACAATTACCCAAAATTTAAACAAAATT 357598 Query 112554 ATTGATAGAAATTTTTACCCCGTT-GAGACTGCTCGTAAATCTAATATGAGACACCGTCC 112612 |||||| |||| || || ||| ||| ||| || || || ||||||||| | || Sbjct 357597 ATTGATGTGAATTACTATCCAGTTCCAGA-AGCTAAAAATTCAAACATGAGACACAGACC 357539 Query 112613 AATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGA 112672 |||||| | ||||| |||||| | || ||| |||| || | || | ||| ||| Sbjct 357538 AATTGGGATTGGTGTTCAAGGTTTGGCTGATACATTCGTTTTAATGCGTTATCCATATGA 357479 Query 112673 TTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || | || | || | ||| | ||||||||||| || ||| | | || | Sbjct 357478 AAGTGAAAATGCAATTAAATTAAATCAACAAATATTTGAGACTATTTATTATGGAGCCTT 357419 Query 112733 TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCC 112792 || || || | || || ||||| || ||| ||| |||||| | | || Sbjct 357418 AGAAGCAAGCTGTGAATTAGCAGAAAAAGAAGGTGTATACAGTACCTTTAAAAATAGCCC 357359 Query 112793 AGCTTCACAAGGGGTGCTT--CAATTTGATATGTGGGAAGGTGAGACC-AAGCTTCACTA 112849 | ||| | ||| || |||| |||||||| |||| | ||| | | | | Sbjct 357358 TG--TCAGTAATGGTATTTTGCAATATGATATGT-GGAATAAAATACCTACGGACCTTTG 357302 Query 112850 CGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TG 112907 | |||| ||||| || || || | | || ||||||||| ||||| | Sbjct 357301 GAATTGGGTTGCTCTAAAAGAGAAAATTTCTAAACACGGGCTTCGTAAC--TCTTTGCTT 357244 Query 112908 ATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAA 112967 | || || ||||| || || ||||| |||||||| | || |||||||||| ||||||| Sbjct 357243 TTAGCGCCTATGCCTACCGCATCCACAGCACAAATTCTTGGAAATAATGAATCCTTTGAA 357184 Query 112968 CCCTACACGACGAACATCTATCTGAGAAGA 112997 || | || | ||||| |||| ||||||| Sbjct 357183 CCTTTTACATCAAACATATATCAGAGAAGA 357154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620685384810560