Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq401 147 3e-30 >seq401 Length=384550 Score = 147 bits (162), Expect = 3e-30 Identities = 459/700 (66%), Gaps = 17/700 (2%) Strand=Plus/Plus Query 105925 TCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTG 105984 ||||||| |||| ||||| | || | ||||||||| |||||||||| || | ||||| Sbjct 357154 TCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAGGATTCATTATTTCCAAGAATTTG 357213 Query 105985 TGCGGTGGAGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTTTCC 106042 ||| ||||| || || ||||| || || | | ||||| ||||||||| || | || Sbjct 357214 TGCTGTGGATGCGGTAGGCATAGGCGCTAAAAGCAAAGA--GTTACGAAGCCCGTGTTTA 357271 Query 106043 TTGATGCGTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACA 106100 || || || ||| || |||| | | || | | | ||| | |||| ||| Sbjct 357272 GAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTCCG-TAGGTATTTTATTCC-ACA 357329 Query 106101 TATCAAATTG--AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACC 106158 ||||| |||| || ||| | ||| || | | ||| || || ||| Sbjct 357330 TATCATATTGCAAAATACCATTACTGACAGGGCT--ATTTTTAAAGGTACTGTATACACC 357387 Query 106159 TTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGAT 106218 || ||| || ||||||||||| || || | || | | | ||| || || ||||| || Sbjct 357388 TTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATAATAAATAGTCTCAAATAT 357447 Query 106219 ACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATAC 106278 | ||| | | | || | || ||| ||| || || |||| ||| Sbjct 357448 TTGTTGATTTAATTTAATTGCATTTTCACTTTCATATGGATAACGCATTAAAACGAATGT 357507 Query 106279 ATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGC 106338 ||| || | |||||||||||| | ||||| |||||||||| ||| || || ||| || Sbjct 357508 ATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGTCTCATGTTTGAATTTTTAGC 357567 Query 106339 AGTCTC-AACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCT 106397 ||| ||| ||||| |||| ||||| | | ||||| ||||| ||||| | | Sbjct 357568 T-TCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTTAAATTTTGGGTAATTGTTT 357626 Query 106398 TTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTG 106457 | |||| ||| | | |||||| ||| |||| | |||||||||||| || | Sbjct 357627 TAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTT---TGTCTTCATTGACAAACATGT 357683 Query 106458 GAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAA 106517 || || |||||||| ||||| || |||||| ||||| | ||||| |||| || Sbjct 357684 TGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCATCTTCCGAGGTGTATTCTACAA 357743 Query 106518 TTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGT 106577 ||||||| || | ||| || ||||| || || | || | ||| || || ||| ||| Sbjct 357744 TTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTGTTGATTGCTTTTTCTGT 357803 Query 106578 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 | || | || || || ||||| | || || || ||||| Sbjct 357804 TACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTC 357843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589926610263520