Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq53 176 1e-38 seq578 98.7 2e-15 >seq53 Length=2198565 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || ||||| ||||| || || || |||||||| ||||| || | ||| || Sbjct 1830978 CTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTG 1830919 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | |||||||| | |||||| || || ||||| || ||||| |||||||| ||||| ||| Sbjct 1830918 CGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCT 1830859 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || |||||||||||||| ||||| || ||||||||||| || ||||||||| ||| Sbjct 1830858 TCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGG 1830799 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || ||||| | ||||| ||||| | ||||||| Sbjct 1830798 GTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | || ||||| ||||| || ||||| |||||||| ||||| || | ||| || Sbjct 1830751 TCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGT 1830692 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | |||||| || || ||||| || ||||| |||||||| ||||| || Sbjct 1830691 GCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACC 1830632 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || ||||| || || || ||||||||||| ||| ||| ||||| | Sbjct 1830631 TTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAA 1830572 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || | || ||||| || | |||||||||||| | ||||||| Sbjct 1830571 TGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTT 1830528 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || | || || || |||||||| ||||| || | || |||| |||||||| Sbjct 1831194 ACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCTTCC 1831135 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || ||||||||||| ||||| ||||| || ||||| ||||| |||||||| Sbjct 1831134 AATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGG 1831075 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || || ||||||||||| ||| ||| || || | || | || ||| Sbjct 1831074 ATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTTTTT 1831015 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||||| ||||| || || | ||||||| Sbjct 1831014 CCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 >seq578 Length=1472074 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 ||||| |||||||| || |||||||||||||||||||| || || || || ||||| Sbjct 656162 TGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCGATGGTA 656103 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGC 195138 ||||| ||| || ||||| |||| ||||| || || | |||||||||||| | ||| Sbjct 656102 TCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTACGAAGATCTGC 656043 Query 195139 AT 195140 || Sbjct 656042 AT 656041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109377146467916