Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq326 145 5e-30 seq53 120 2e-22 seq429 113 3e-20 >seq326 Length=503882 Score = 145 bits (160), Expect = 5e-30 Identities = 584/901 (65%), Gaps = 33/901 (4%) Strand=Plus/Minus Query 5656 GTGCACTCCGGACCACCCACGACCGTACATGGCTACACCCACAATTAGCTTCTTCGATTC 5715 ||| ||||||| ||||||||| || ||||| || ||||| || | | ||||||| | Sbjct 281335 GTGTACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAATTTTCTTCGGGTT 281276 Query 5716 GACGCTCTGATTTAACAGACGCTTGATTGAAAAATCTGTCGTGTATGTCTCGCCTGGGTT 5775 || | ||| || || || | || ||||| || || || || || ||| Sbjct 281275 TACACCTTGAGCCAATAGGTACTGAACACCGAAGTCTGTGGTATAAGTTTCCTTTGAGTT 281216 Query 5776 CCACGATGGAGCGTACAGAGGTGTCTGGTGTCCCAGATCCGTTAACG-ACCAGGCACCCT 5834 |||| ||||| ||||| | || || || || | || | | | |||| ||||||| Sbjct 281215 CCACTCGGGAGCATACAGTGCGGTTTGATGACCTA-ATGTATCATTGGACCAAGCACCCT 281157 Query 5835 TGTAGTCGTACGTCATAACAAAGATGTGATCAAGATACCTTTGTGC-GCTGGCGTAGTCG 5893 | ||||||| |||||||||| || || || | || | || || ||| |||||| Sbjct 281156 TAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCGCAGCTTT-GTAGTCT 281098 Query 5894 ACAACGTCGATCTTGTCATGTCCCGCGCCGATAGCACTTGTCAATT-GTAACCGTTTACC 5952 ||||| | ||| ||||| ||| || | ||||| ||| |||| ||| | | | | Sbjct 281097 ACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATTCGTA--CTTCTTGC 281040 Query 5953 CCGCTTC-TCGCCCAACTCGTCAAGCATCACGCGAAGTTCCCGCAACAAAAGAGTGTACG 6011 || ||| | | || |||| |||||| | ||||| ||| || || | | || Sbjct 281039 CCATTTCATTGGATAATTCGTTAAGCATTTCTCGAAGCTCCTTCATTAATAAAACATAG- 280981 Query 6012 TATTGCGGTCCA-CCTCGGCATTACCCAACACAGGATTAGCACCCTTTCCACCCGGAAAC 6070 | | | ||| ||| | | ||| | || || || ||||| || || || || Sbjct 280980 -ACTTCA--CCATCCTTAGGACCACCAAGTGTCGGGTTTGCGCCCTTACCTCCAGGGAAT 280924 Query 6071 TCCCAGTCAATGTCCACTCCGTCAAAGAACTTCCATGTCTCCAGAAACTCGCGGACACTT 6130 |||||||| ||||| || || || || || ||||| || | || || || ||| Sbjct 280923 TCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTGAAGGAAGTCTTTTACAGAG 280864 Query 6131 GTGACGAA-------CACCTTACGTTTGGAGTCATCGTTCATAAAATAAAACGGATCGCT 6183 | ||| | | |||| || ||||||| | || | | || ||||| Sbjct 280863 TCAATGAAACGCGCTCTCTTTACCTT----GTCATCGA--AGAAGA-AGAATGGATCAGC 280811 Query 6184 CAACGTCCACCCCCCTATGGATGGTAGGA-CTGTCAACGAAGGGTTGTGACGTTTGATGG 6242 | ||||| || || || || || || | || | | | | ||| |||| | | Sbjct 280810 GAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTTGCTT-GTTTTAAAG 280752 Query 6243 CCATCAGCTGGCCAAAGTTACCCTTGTACGCTTCGTTGTACGCCTCAACGCCTTTCTGTG 6302 ||||| |||||||||||| || ||||| | ||| || | | || ||||| |||| Sbjct 280751 ACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTCCTTTTTGTG 280692 Query 6303 GTTTTTGCAACGCGGCCCAGATGTCGTGAATACTCACCTTGAAGTCATCGCGACCAGCGC 6362 ||||||| || || |||||| ||||||||| || || ||||| || || ||| || Sbjct 280691 GTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTCGGCCACTGC 280632 Query 6363 AGGATTTCTGTAGCGCCTCAAAGGAATT--GGGAATCTGCTTGAGGGCGTCGTTTATGCC 6420 | ||| |||||| ||| | || | || ||| | || | |||||| || || Sbjct 280631 AAGATCTCTGTAACGCTTGGAA--ACTTCCCTCAATTTCTTTCAAACTGTCGTTGATTCC 280574 Query 6421 GTTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATTGGTAC 6480 | |||||||||||| || || || ||||||| || || || | ||| || ||||||| Sbjct 280573 ATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGGGATTGGTAT 280514 Query 6481 CTTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACCGACGAC 6540 ||| | |||| ||| ||| ||| |||||||| || || || || ||||| || || Sbjct 280513 ACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAGCACCAACAAC 280454 Query 6541 C 6541 | Sbjct 280453 C 280453 >seq53 Length=2198565 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||| | | || || | |||| ||| ||| || |||||||| ||||| | Sbjct 1830986 TTCCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTG 1830927 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||||| | || |||| |||| ||| ||||| ||||| || || |||||||||||| | | Sbjct 1830926 AAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTG 1830867 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||| || |||||| | | || | ||| ||| || | Sbjct 1830866 GAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCA 1830807 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| |||||||| || ||||| || || || || || ||||| Sbjct 1830806 CTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | || || | |||| ||| || || |||||||| ||||| | Sbjct 1830758 TTCCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTG 1830699 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||||| | || |||| |||| ||| ||||| ||||| || || |||||||||||| | | Sbjct 1830698 AAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTG 1830639 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| || || ||| || | | || | || | |||| Sbjct 1830638 GAATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAA 1830579 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || | || |||||||||||||| ||||| || || ||||||||||| || Sbjct 1830578 CTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTT 1830527 >seq429 Length=186180 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| | | |||||| |||||||| | ||| ||| ||||| ||||||||||| || Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| || || ||||| || || || || | || || ||||| | || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | |||||||| || ||||| || || | | || | || |||||| || Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | ||| ||||| || |||||||| || ||||||||||||||||| || Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324604527843744