Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq401 609 3e-169 seq1092 167 3e-36 seq183 136 4e-27 >seq401 Length=384550 Score = 609 bits (674), Expect = 3e-169 Identities = 1205/1783 (68%), Gaps = 32/1783 (2%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || ||||| | ||| | ||| |||| |||||| || ||||||||||| || Sbjct 356776 TTTGTCAACCGTAAATTGAATGGCATTGGCAGCTGGTTTTGTGCGCAAATAATACATTCC 356835 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || | || | ||||| ||| ||||| ||| || ||||| |||| | || Sbjct 356836 AGTTTTAAGCCCCATTTTCCATGCATGAAAATGAATAGATGTCAATTTTCCATAATTTGG 356895 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | || ||||||||||| ||| || || |||||||||||||| || ||||||||||| Sbjct 356896 TTCAGCAACATGAATATTAAAAGACTGGCTTTGATCAATAAATGCGCCCCTATCAGCTGC 356955 Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 ||| | | | | ||| || || ||||| |||||||| || | | | || Sbjct 356956 CATTTGGATCGT--CGTTTTAACTGAAATTTCCCAGACTGTTTTGTATAAGTCTCGTATT 357013 Query 47211 TCTTCTGGGAGA--TTAG-TATTTTGAATAGATCCTCCgttttctataattttgtttttt 47267 |||| ||| | || | |||||||||| || || ||| | || || |||||| Sbjct 357014 TCTTTTGGAATTCTTTCGATATTTTGAATTGAACCATTGTTATGAATGATAAGGTTTTTC 357073 Query 47268 aattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATT 47327 | || | ||| || | | || ||||| ||| ||||||||| | || || | | Sbjct 357074 ATGTCTTCATCCCATAGATCTGCTTGCGTTAAATCTTTCAAAAGATGATGGTTCACTACT 357133 Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| | |||||| || |||| | ||||| | ||| Sbjct 357134 TGAAATTCTCCTGACAAAACTCTTCTCTGATATATGTTTGATGTAAAAGGTTCAAAGGAT 357193 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||||| |||||| || || ||||| |||||||| | || ||| |||| | Sbjct 357194 TCATTATTTCCAAGAATTTGTGCTGTGGATGCGGTAGGCATAGGCGC---TAA-AAGCAA 357249 Query 47448 TTTCTTACT----CCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATC 47503 |||| || | ||| || | ||||| |||||| || Sbjct 357250 AGAGTTACGAAGCCCGTGTTTAGAAATTTTCTCTTTTAGAGCAACCCAATTCCAAAGGTC 357309 Query 47504 TGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATT 47563 | || | |||||| | ||||||||| | ||| || ||||| | || | || Sbjct 357310 CGTAGGTATTTTATTCCACATATCATATTGCAAAATACCATTACTGACAGGGCTATTTTT 357369 Query 47564 ATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATA 47623 | | || | || ||| | | || || | |||||| |||||||| || || | ||| Sbjct 357370 AAAGGTACTGTATACACCTTCTTTTTCTGCTAATTCACAGCTTGCTTCTAAGGCTCCATA 357429 Query 47624 ATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATA 47683 ||| || || |||||||||| | |||| || |||| | | |||| | ||||| Sbjct 357430 ATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATATGGATA 357489 Query 47684 NNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGT 47743 |||||||| ||||| |||||||||||||| ||||||||||| || | Sbjct 357490 ACGCATTAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTCTGTGTCT 357549 Query 47744 TTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAG 47803 | || ||| | ||||||||| | |||||| | || | ||| |||||||| |||| Sbjct 357550 CATGTTTGAATTTTTAGCTTCTGGAACTGGATAGTAATTCACATCAATAATTTTGTTTAA 357609 Query 47804 ANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCA-AACTTGT-TATTT 47861 | | ||| |||| || | ||||| || || | | || Sbjct 357610 ATTTTGGGTAATTGTTTTAGTGACTTCCTTTAACTTTTCAAAATTGTAAGTTTTGTCTTC 357669 Query 47862 ATA-ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATT 47920 || |||||| | || || ||||| ||||||| |||||| ||||| || |||| | Sbjct 357670 ATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCACTTCATCTTCCGA 357729 Query 47921 AGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATG 47980 || |||| || ||||| | || ||||| | |||||| || || || | ||||| || Sbjct 357730 GGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTGTTG 357789 Query 47981 ATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTG 48040 ||| | ||||||||| ||| || || |||||||| ||||||||||| |||| || Sbjct 357790 ATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCCAGTCTCTACTTG 357849 Query 48041 AGATTCAATGATAGATTTCCAAACAGTCCTAGC-----CTT-TATAACAGCTCTAGCTTT 48094 | ||||| |||| |||||| | | | || ||| | ||||| || || Sbjct 357850 TGCCTCAATTATAGCTTTCCATAAAATTTGTGCACGAACTTGTTTAACA----TAC--TT 357903 Query 48095 ATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAA 48154 || || ||||| |||| ||| |||||||||||||| || || | | | | | Sbjct 357904 CTTCTCTTGTTCATATTGTTCATACAACTTCTCAAATTCTTCTCCCCAGCAGTCAGCGAG 357963 Query 48155 CCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCAT 48214 |||||| | | | ||||||||| | ||||| || | |||| |||||| |||| Sbjct 357964 GCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTACTCTCTTCAT 358023 Query 48215 AAATATATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGC 48273 |||| ||| || ||||||||||| ||| || | || || | | | |||||| || | Sbjct 358024 GAATAAATCAGGAATCCAAAGAGC-ATAGAAAAGCTCTCTGGCACGCACTTCTTCTTTCC 358082 Query 48274 CACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATA 48333 | ||||| |||| || || | ||| || | |||||||||||||||||||||||||| | Sbjct 358083 CTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGTTCTAAATAAA 358142 Query 48334 TTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTAT 48393 | || | | ||||||||| |||||| || |||||||| | |||||| ||||||||||| | Sbjct 358143 TAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCAGTATTGTTGT 358202 Query 48394 AAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTC 48453 | || |||||||| ||||| | |||||||| | ||||| ||||| | |||||| ||| Sbjct 358203 ACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCAATATATGTTC 358262 Query 48454 CACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAG 48513 | ||||||||||| | || | ||| || |||||||| || ||||||| | Sbjct 358263 CCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTTGATATTAATG 358322 Query 48514 CACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAA 48573 | | || ||||||||||| || || || ||||| |||||| ||||| | || || Sbjct 358323 CTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATAGCAATTAAAA 358382 Query 48574 AACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAA 48633 ||||| ||||| || || | ||| ||| || | |||||| |||||| Sbjct 358383 AACAAGAAGACAGCTGAGGTCTAGGTGTTGCTGCTGAGAAAAGAGTTGGACTGGCATGAG 358442 Query 48634 TAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGAT 48693 |||| |||| || |||||||| || ||||| | || ||| |||||| || | || Sbjct 358443 TAAAGTATTTTTCAGATAACAAATTGTATGTCTTGATGGCAGCATCTATGTCATCTCCAT 358502 Query 48694 GTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 ||||||| || | || | ||||||||||| ||| || || || Sbjct 358503 GTATACCAATTGCCACTCTCATTAACATATGTTGTGGCCTCTC 358545 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 48926 tttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATC 48985 ||||||||| |||||||| | ||| ||||||| | ||||| || | | ||||||||| Sbjct 358951 TTTTTTTGTCTCTTTATGTAAATTGGATATAGCAAGCCTAGCGGCAAGGACAGCATAATC 359010 Query 48986 TGGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGT 49045 ||||||| |||||| |||| || || ||||| ||||| |||||| ||| || Sbjct 359011 TGGATGATCTGTTGTCATTGTAGCAGCAATCTCTGCAGCTAAATTATCTAGTTCAACTGT 359070 Query 49046 AGTTACACCTGTATATATTCCTTGAATAACTTTCATTGCTATATTTAC 49093 || || || | ||| || || |||||||||| || ||| |||| Sbjct 359071 TGTCACTCCAGAATAGATGCCACTTATAACTTTCAGTGTTATGCTTAC 359118 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 48744 TTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTAT 48803 || || || || || | ||| |||||| ||||||| |||||||||||||||||||||||| Sbjct 358659 TTATTGTTAATCTTGAGAAGGTATGATCTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 358718 Query 48804 GAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTAT 48849 |||||| | |||| | ||||| ||||| || ||| || |||| Sbjct 358719 TTAAAGTCCCTGTCATATACAATTGCTGAATCTAATCTGTCTTTAT 358764 >seq1092 Length=556928 Score = 167 bits (184), Expect = 3e-36 Identities = 319/467 (68%), Gaps = 5/467 (1%) Strand=Plus/Plus Query 136634 ATGACTCCTATTAACCCAATGTTGGCAGAATCATGTGAATCTGTAGATAAAGCATTTAAA 136693 |||||||||||| |||||||| ||||| | ||| |||| | || | || | ||| Sbjct 531360 ATGACTCCTATTCTGCCAATGTTAGCAGAGGCCTGTAAATCAATTGAAATGGCTATGAAA 531419 Query 136694 AAGTTTCCAAATGGAATATTTGCAGAAATAAAATATGACGGAGAACGTGTACAGGTTCAC 136753 |||| ||||||||| || ||| | |||||||| ||||| || || ||||| || ||||| Sbjct 531420 AAGTGTCCAAATGGTATGTTTTCTGAAATAAAGTATGATGGTGAGCGTGTCCAAGTTCAT 531479 Query 136754 AAGAATGGAAACCACTTTGCATTTTTTAGTAGAAACATGAAACCCGTAACAAAACATAAA 136813 || || || || | ||| | |||| | || | || || |||| ||||||| Sbjct 531480 AAAAAAGGTAAGGAGTTTAAGTATTTTTCTCGAGCTCTAAAGCCAGTAATGTCACATAAA 531539 Query 136814 GTTGATTATCTTAATGAGTATATACCTAAAGCCTTTAAAAATGTATCATCTCTTATTTTA 136873 || || || |||| || ||| |||| |||| ||| ||| | | | | ||||| Sbjct 531540 GTAAATCATTTTAAAGACTATTTACCACAAGCATTTCCAAAAGGGGAAGATATGATTTTG 531599 Query 136874 GATTCAGAAATAGTACTAGTAGAT---AAAAATAATAAACCATTACCATTTGGCAGTTTG 136930 ||| ||||| || || | |||||| |||| ||||||||||| ||||||| ||| Sbjct 531600 GATGCAGAAGTATTAATGGTAGATGTGAAAACAGGAAAACCATTACCGTTTGGCACTTTA 531659 Query 136931 GGTATACATAAAAAGAAGGAATATAATGATTCATCACTATGTTTATTTGTATTTGATTGT 136990 ||| |||||||| || || | ||| ||| | | |||| |||| ||||||| ||| Sbjct 531660 GGTGTACATAAACAGTCAGAGTTTAAAGATGCCCAAGTATGCTTATACATATTTGACTGT 531719 Query 136991 TTGTTTTTTGATGGGTTTGATATGACAGATATTCCTCTAAATGATAGACGATCGATTCTT 137050 |||| || |||| | | ||| ||||| || | || ||| || | ||| || Sbjct 531720 TTGTATTACAATGGTGAAGTTCTGATGGATATGCCCGTTAAAAGGAGAAGA-CAATTTTT 531778 Query 137051 -CAAGAAATAATAGTAGAAATTCCTAATAGAATAATGTTATCAGAAC 137096 | |||| || |||||| || ||| |||||||| || |||| Sbjct 531779 ATATGAAAATATGGTAGAAGTTAAAAATCATATAATGTTTTCTGAAC 531825 >seq183 Length=738700 Score = 136 bits (150), Expect = 4e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 18997 ATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATA 19056 |||| |||||| || |||| |||||||| |||||||| ||||| | ||| ||||| Sbjct 171497 ATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCTTTTTCAGCCAAAATATT 171438 Query 19057 GAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCT 19116 |||||||| |||||| ||||| || || || || || ||||| || || | |||||| Sbjct 171437 GAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAAATGCTACAATTCTTTCA 171378 Query 19117 CCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACA 19176 ||| | ||||| || | ||||| | || |||||||| |||||||| |||||| Sbjct 171377 CCAAATGTAGCAGATTTGCTTGCTATCCACTGGAGAGCCCAATCTGCCTTCTTCTTTACA 171318 Query 19177 CATGGCATTGTCTCTATAGAATTAAATA 19204 ||||| | ||||||| || ||| |||| Sbjct 171317 CATGGAAGAGTCTCTACAGCATTGAATA 171290 Score = 127 bits (140), Expect = 2e-24 Identities = 121/155 (78%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||||||||| | |||||| || || |||||||| || || |||||||| |||||| Sbjct 171049 TACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAGCCATAGAAACATCTGGCTTCT 170990 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 |||| ||||| || | || ||||| |||| ||||||||| ||||| ||||| Sbjct 170989 GTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTTTCATTGACTATGCCATCTGAT 170930 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATG 19409 || ||||| || || |||||||| ||||| || || Sbjct 170929 GCAGCAAAGAAAGCCAATACATGCTTAATGAAGTG 170895 Score = 104 bits (114), Expect = 3e-17 Identities = 80/95 (84%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 || ||||| || ||||||||||| ||||| |||||||| ||||| ||||||||||| | | Sbjct 170685 TTCGATAAGTCCACTTCTTCAACAGTCCAGAAAGAAGCTTCTGCCTTTTTATACATTTGC 170626 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAA 19544 || ||||| | ||||| |||||||| |||||||| Sbjct 170625 CAAATATCCGGGTATTGAATAGGAAACATAACAAA 170591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562057170306720