Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq183 105 8e-18 >seq183 Length=738700 Score = 105 bits (116), Expect = 8e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 || || |||||||| |||| ||||||||| || || | |||||| || || |||||| Sbjct 171073 ATGTATGTATCAATGAGTAGGGAATACATTTCTGAATGTACATTTTCCATTGCAATCTGA 171014 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 || ||||| ||||| || ||||| | || ||| || || | | ||||| | | | | Sbjct 171013 AAGCCATAGAAACATCTGGCTTCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGA 170954 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 |||||||| ||||| ||||| || ||||||||||| | |||| || || || || Sbjct 170953 TTTTCATTGACTATGCCATCTGATGCAGCAAAGAAAGCCAATACATGCTTAATGAAGTGC 170894 Query 37626 CTTTCA 37631 || ||| Sbjct 170893 CTCTCA 170888 Score = 105 bits (116), Expect = 8e-18 Identities = 102/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 37194 AAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtt 37253 |||||| |||| || |||| |||||| ||||||| || ||||||| ||||| Sbjct 171514 AAACCT-CATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTC 171456 Query 37254 tttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCA 37313 ||||| | ||||||||||| |||||| |||||| |||||||| || ||||| || ||| Sbjct 171455 TTTTTCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCA 171396 Query 37314 AATGCTACAA 37323 |||||||||| Sbjct 171395 AATGCTACAA 171386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592262395701920