Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq326 367 1e-96 seq53 156 3e-33 seq429 111 1e-19 seq578 93.3 3e-14 >seq326 Length=503882 Score = 367 bits (406), Expect = 1e-96 Identities = 768/1128 (68%), Gaps = 41/1128 (4%) Strand=Plus/Minus Query 42264 GCGTTCAACAAATCGCCGTTGTCAGCGTCAATCTCCCAAGCAAACAATCCGCCTAAATCA 42323 |||||||| | || ||||| || ||||| || ||||| || ||||| || |||| | | Sbjct 281631 GCGTTCAATATGTCACCGTTATCTGCGTCTATTTCCCACGCGAACAAACCACCTAGGTAA 281572 Query 42324 TTTTCGATCACATATTGCGCTTTGTCCAACACCGATTCGGCGCTGTCATAACTAATCAAA 42383 || | | || |||| |||| || || ||| ||| |||| || ||| ||| Sbjct 281571 TTCTTTCTTACGTATTTACCTTTCTCGGTAACGGATCTCGCGTTGTCGTATGTAA-CAAG 281513 Query 42384 TTCCCC-GTATCTTGTTGAAAGACATACGCGGCTTTTGCCGTTTTATCATATGTGTATTC 42442 |||||| ||| | ||| || ||||| || |||| || ||||| || | | || Sbjct 281512 TTCCCCTGTAGATGGTTTGAACACATAAGCAGCTTGGGCAACGTTATCGTAGTGGAACTC 281453 Query 42443 GTAATCTTTTAGATTATT----TTT--AATCTGTCTATAGTCTACGACGCCATCTTCCCA 42496 | | ||| || | | ||| ||| | || || || || || ||||| | ||| Sbjct 281452 CCATTTGTTTTGAGCAATGCCATTTGCAATTTCCCTGTAATCGACCACACCATCCTGCCA 281393 Query 42497 AGTACCC--GAAACTGGACCTGTCGCAATACCCGTGAAGGGATTATTGTTTTGGTAATTG 42554 || ||| | || || ||||| || || |||||||| |||||| | | |||||| Sbjct 281392 TGTGCCCTTGCAA--GGTCCTGTTGCGATCCCCGTGAAAGGATTACCATCTGTATAATTG 281335 Query 42555 CTTACTCCGGTCCAACCTCGTCCGTACATGGCCACGCCTAAAATTATTTTTTGAGGTTTC 42614 |||||||||||| || ||||| ||||| || || |||| | ||||| | || || Sbjct 281334 TGTACTCCGGTCCACCCACGTCCATACATTGCAACACCTACGACAATTTTCTTCGGGTTT 281275 Query 42615 ACTTTTTGTTTCAAAAGCGTTTGAACGGCATAATCTGCCGTGTAATGTTCGTTTTCGTTC 42674 || ||| ||| || ||||| | | |||| || ||| ||| ||| |||| Sbjct 281274 ACACCTTGAGCCAATAGGTACTGAACACCGAAGTCTGTGGTATAAGTTTCCTTTGAGTTC 281215 Query 42675 CATTCGGGAGCATACAGATTTGTTTGATGGCCCAA---ATCTGAATTTGACCAAGCACCT 42731 || |||||||||||||| |||||||| || || ||| ||| ||||||||||| Sbjct 281214 CACTCGGGAGCATACAGTGCGGTTTGATGACCTAATGTATC---ATTGGACCAAGCACCC 281158 Query 42732 TTAAAGTCATAGCTCATTAAAAATATTTTATCCAAATAGTTTTGAGCATCGTTGTAATCG 42791 |||||||| |||||||| | ||| || | |||| || || || ||| | ||||| || Sbjct 281157 TTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAATTCTGCGCAGCTTTGTAGTCT 281098 Query 42792 ACAATAGCGATTTTGTCGTCTCCCGCACTAATTGCGCTAGTCAATTCGTATTTGCGATTA 42851 |||| ||||||||| ||| |||||||| || || |||||||| || Sbjct 281097 ACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGATGTTAATTCGTACTTCTTGCCC 281038 Query 42852 GTTTCGTTTTCTAGTTCGTCCAGCATGTCGCGCAATTC--TC-GTAACAAAACTACATAC 42908 |||| || || ||||| ||||| || || | || || ||| ||||| | | || Sbjct 281037 ATTTCATTGGATAATTCGTTAAGCATTTCTCGAAGCTCCTTCATTAATAAAAC-ATAGAC 280979 Query 42909 GTAAGACCGTCATTTTGAGGATCTCCAATTGTCGGATTAGCTCCTTTACCACCGGGAAAT 42968 | ||| || || |||| | |||| |||||| || || || ||||| || || ||| Sbjct 280978 TT--CACCATCCTT---AGGACCACCAAGTGTCGGGTTTGCGCCCTTACCTCCAGGGAAT 280924 Query 42969 TCCCAATCAATATCGACGCCGTCAAAAAATTTCCAAGTGAGCAAAAACTCACGTACTGAA 43028 ||||| || || || || || || ||||||||||| || | | || || ||| || Sbjct 280923 TCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTGAAGGAAGTCTTTTACAGAG 280864 Query 43029 TCCACAAA------TAT-TTTACGCTTGTTTGCATCGCTGAAAAAATAAAACGGGTCGGA 43081 || | || | | ||||| ||||| |||| ||| || | || || || | Sbjct 280863 TCAATGAAACGCGCTCTCTTTAC-CTTGT---CATC---GAAGAAGAAGAATGGATCAGC 280811 Query 43082 CAATGTCCATCCACCTATCGAAGGTAACACTTTAAGATGAGGGTTAGCTTTTTTGGCTGC 43141 | ||||| || || || ||||| | | || |||| ||| | |||| ||| | Sbjct 280810 GAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTTGCTTGTTTTAAAGA 280751 Query 43142 CATTAATTGACCAAAGTTGCCTTTGTACGGTTCATTCCACGAGGAAACACCTTTTTGTGG 43201 ||| || || ||||||||||||||||| ||||||||||| || |||| ||||||||||| Sbjct 280750 CATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTCCTTTTTGTGG 280691 Query 43202 TTTCTGTATAGCCGCCCACGGATCGTGTATGGAAACTTTGAAGTCGCTTCGACCCGCACA 43261 ||| |||| || ||||| || ||||| ||||| ||||| ||||| ||| || || Sbjct 280690 TTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTCGGCCACTGCA 280631 Query 43262 AGATTTTTGAAGAGCTTCAAAACTGCCAGGAATAGATTTTAAACTGTCATTAATGCCGTC 43321 |||| | || | |||| ||||| || ||| ||| |||||||| || || || || Sbjct 280630 AGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCAAACTGTCGTTGATTCCATC 280571 Query 43322 ACCGCCGCATATCGGAATAAATCCGTACAACAAATGAGACAAATTGGG 43369 ||| || || ||||| ||||| |||||||| | ||||| ||||| || Sbjct 280570 ACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGG 280523 >seq53 Length=2198565 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| || | |||||| || | |||||| || ||||| ||||| || ||||| || | Sbjct 1830986 TTCCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTG 1830927 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | |||| ||||| ||||| || ||||| || | ||| || || || || | Sbjct 1830926 AAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTG 1830867 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || ||||||||||| ||| ||| |||| | |||||||| | ||||| Sbjct 1830866 GAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCA 1830807 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||| || |||| |||||||| || | ||||| || || || ||||| Sbjct 1830806 CTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101239 ATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATC 101298 ||| || ||||| | ||| | || | ||| | ||| ||||| ||||| || ||||| || Sbjct 1831216 ATTGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTC 1831157 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 | | |||| | |||| ||||||||||| || || || || | ||| || || || || Sbjct 1831156 TGACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGG 1831097 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTC 101418 ||||| ||||| || ||||| ||||| ||| ||| |||| | ||||| || | ||| Sbjct 1831096 TGGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTC 1831037 Query 101419 CACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||| ||||| || || | ||||| ||||| || ||||| Sbjct 1831036 AACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 >seq429 Length=186180 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || || || || |||||||| || || || || || |||| | || | |||| Sbjct 15697 AACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGACAGGGTACGCCCATCT 15638 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || | ||| ||||| || || |||||||||||||| || || || || || || ||||| Sbjct 15637 TCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGGATTCCCTCCTTATCC 15578 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || || ||| |||| | |||||| || | ||||| || || |||| || Sbjct 15577 TGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACCTCTAGGGTGATGGTC 15518 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 || || || | ||||| ||||| ||||||||| || Sbjct 15517 TTACCCGTGAGGGTTTTCACAAAGATCTGCATGTTT 15482 >seq578 Length=1472074 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 101347 CTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGT 101406 ||||||||| || || || |||||||| ||||||||||| ||| ||| |||| | || Sbjct 656163 CTGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCGATGGT 656104 Query 101407 GTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTG 101466 || || | ||| || |||||||| | || || || || | ||||||||| || ||||| Sbjct 656103 ATCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTACGAAGATCTG 656044 Query 101467 CATGGTTACGC 101477 ||| | |||| Sbjct 656043 CATCTTGACGC 656033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396242911783236