Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq326 131 1e-25 seq129 122 7e-23 seq109 107 1e-18 seq53 95.1 9e-15 >seq326 Length=503882 Score = 131 bits (144), Expect = 1e-25 Identities = 326/490 (67%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 27710 GCTTACTTTGTCGAGTGGGGTGTGTATGGTAGACAGTATCCGGCCAACAAACTACCCATA 27769 ||||||||||| || ||||| || ||| |||| ||||||| | || |||| || Sbjct 280463 GCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAATC 280522 Query 27770 CCAAATCTGACACATTTGCTGTACGGCTTTGTGCCCATTTGCGGCGGAGACGGTATCAAC 27829 || ||| | || ||| | ||||||| ||| | || ||||| || || || || |||||| Sbjct 280523 CCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAAC 280582 Query 27830 GATAGCCTAAAACAGATCCCCAATTCTTTTGAGGTCCTCCAAAAGTCATGCTCAAACCGA 27889 || || | ||| | || ||| | | | || | || ||| |||| Sbjct 280583 GACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGA 280642 Query 27890 GCCGACTTTAGTGTGAGCATACACGATATATGGGGCGCGCTGCAAAAACCGCAAAAGGGT 27949 | ||||||| || ||| ||||| |||| || | |||||||| ||||| || Sbjct 280643 GAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGA 280702 Query 27950 GTAGAGGCGTGGAACGAGCCGTACAAGGGTAACTTTGGCCAGTTGATGGCCATCAAACGA 28009 | | ||||| || || ||||| || |||||||||||||||||| | | |||| | Sbjct 280703 CTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAA 280762 Query 28010 -CACCATCCCCACCTATCCATACTGCCCTCGATTGGTGGGTGGACTCTGAGCGATCCATT 28068 || | || | ||| || || || || ||||| || ||||| || |||||||| Sbjct 280763 GCAAGA-CCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATT 280821 Query 28069 CTTTTTTATGCACGACCCGGCCAAGCGTGC-CGTGTTTGTAGAGTCTGTGCGCGAATTTC 28127 ||| || | | ||| || ||| | || ||| || | || ||||| || || | Sbjct 280822 CTTCTTCTTCGATGACAAGGTAAAGAGAGCGCGT-TTCATTGACTCTGTAAAAGACTTCC 280880 Query 28128 TGCAAACGTGGAAGTTCTTTGACGGAGTCGATTTGGACTGGGAGTTTCCGGGTGGAAAGG 28187 | ||||| ||||| || || || || || || | |||||||| || || || || |||| Sbjct 280881 TTCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGG 280940 Query 28188 GAGCCAACCC 28197 | || ||||| Sbjct 280941 GCGCAAACCC 280950 >seq129 Length=3256488 Score = 122 bits (134), Expect = 7e-23 Identities = 372/572 (65%), Gaps = 55/572 (10%) Strand=Plus/Minus Query 7552 ACTTTCAAGAATTGGCCCGTGCCGTTTCTTGATCCCCA-AACTA-TGGCCCGCAACGGGT 7609 || ||| | |||||||| || ||||| | ||| || |||| | || | || || | Sbjct 1156065 ACATTCGATAATTGGCCAGTAACGTTTAT--ATCGCCGGAACTTCTCGCTAGAAATGGAT 1156008 Query 7610 TTTATTATTTGGGTCGAAGAGACGAGGTGCGTTGCGCGTTTTGTAAAGTGGAAATCATGC 7669 ||||||| | |||| | ||||| ||||||||||| || ||||| |||||||| ||| Sbjct 1156007 TTTATTACCTCGGTCACGGCGACGAAGTGCGTTGCGCCTTCTGTAAGGTGGAAATAATGA 1155948 Query 7670 GGTGGGTCGAAGGTGACGATCCGGAGAAGGACCATCGGAAGTGGGCACCGCAGTGTCCGT 7729 | |||||||| || || || || | |||| ||| | ||||| ||||||||||| | Sbjct 1155947 GATGGGTCGAGGGAGATGACCCAGCTCAGGATCATAGTCGCTGGGCGCCGCAGTGTCCCT 1155888 Query 7730 TTCTG-----------------------CGT-----TCGTTG--ACCGTCGGCGGG---C 7756 ||||| ||| ||| || || ||| |||| | Sbjct 1155887 TTCTGAGACGTCAGATGGGTGCTGGAAACGTCCCTCTCGATGCAACTGTCAGCGGAGGTC 1155828 Query 7757 GGGACGA----GGT-TG---------GTT--CG-GGCGCG-GTGCACACCCCCGGCCCAG 7798 | ||||| ||| || || || ||||| |||| | || ||||||| Sbjct 1155827 GCGACGAATGCGGTGTGAGAGCGCCAGTAACCGCGGCGCCTGTGCGTATGCCAGGCCCAG 1155768 Query 7799 CCAACCCTAGGTACGCGTTGGAGCAAGTGCGTCTGCTCACGTTCAAGGACTGGCCGAAGA 7858 || | || ||||||| ||| | ||||| | ||| || || ||||| | | Sbjct 1155767 TACACTCCAGATACGCGTCCGAGGCTGCTCGTCTTCGCACCTTTGCCGATTGGCCTAGAA 1155708 Query 7859 GTATAAAGCAGAAACCAAAGCAGCTTGCCGAAGCTGGATTATACTACACGGGCCGCGGTG 7918 |||| || || || | | || || |||||||| || | ||||||||| | ||| | Sbjct 1155707 GTATGCGCCAAAAGCCCGAAGAACTGGCGGAAGCTGGCTTTTTCTACACGGGTCACGGCG 1155648 Query 7919 ATATGACAAAGTGTTTCTACTGTGACGGGGGTCTCAAAGATTGGGAGGAAAACGATATAC 7978 | | || || || || |||||||| ||||| || || || ||||| | |||| | | Sbjct 1155647 ACAAAACCAAATGCTTTTACTGTGATGGGGGCCTGAAGGACTGGGAAAATGACGACGTCC 1155588 Query 7979 CGTGGGAGCAACACGCGCGCTGGTTTGATAAATGCGCATATGTCAAACTAGTCAAAGGGG 8038 | |||||||||||||| || |||||||| |||||| || ||| | |||| ||||| Sbjct 1155587 CATGGGAGCAACACGCCCGTTGGTTTGACCGATGCGCTTACGTCCAGTTAGTGAAAGGTC 1155528 Query 8039 AGGAATATGTTCAGAAGGTAATTACTGAAGCG 8070 || || || ||||| || | | |||||| Sbjct 1155527 GCGACTACGTACAGAAAGTCTTAGCCGAAGCG 1155496 >seq109 Length=1733701 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACCTCTACC 9060 || ||||| ||||||||||| ||||| | || || |||| || ||| ||| | Sbjct 235728 CCAGTTGAACCAAACCCTCCATCTCCCCTGTTAGTTTCAGATAAATTAGCAACTTCTTGC 235669 Query 9061 AGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACG 9120 | ||| |||||| | || || || || | || ||||| ||||| ||||| || || Sbjct 235668 AATGTTGGATAATAAATCCTCTCGCATATAAGCTGTGCAATTCTGTCACCCTTCTTGACA 235609 Query 9121 ACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCA 9180 ||||| ||| || ||||| |||||||| ||||| || | ||||| ||||| || ||| Sbjct 235608 ACAAAATCTTGATCAGAATGGTTGAACAGAACCACCCCAATATTACCTCTGTAGTCTTCA 235549 Query 9181 TCGATCACACCAGC 9194 || || |||||||| Sbjct 235548 TCTATGACACCAGC 235535 >seq53 Length=2198565 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || || || || ||||| | ||| || || ||| |||||||| ||||| || || Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || ||||||||||| || ||||| || || || || || || | ||| Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| || || ||| ||| | | | ||||| | || || Sbjct 1830636 ATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACT 1830577 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||||||||| | ||||||||| || |||||||| Sbjct 1830576 TCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || ||||| | ||| || || || |||||||| ||||| || || Sbjct 1830984 CCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAA 1830925 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || ||||||||||| || ||||| || || || || || || | ||| Sbjct 1830924 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830865 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || ||| ||| | | | || || || ||||| Sbjct 1830864 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACT 1830805 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | ||||| || ||||| ||||| Sbjct 1830804 TCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380903485609404