Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq326 309 3e-79 >seq326 Length=503882 Score = 309 bits (342), Expect = 3e-79 Identities = 652/961 (68%), Gaps = 11/961 (1%) Strand=Plus/Minus Query 106035 GTAATCTACGACGCCGTCCTCCCAAGTGCCCGA-CACGGGCCCGTTGCCGATTCCCGAAA 106093 |||||| || || || |||| ||| |||||| || || || ||||| ||| |||| | Sbjct 281416 GTAATCGACCACACCATCCTGCCATGTGCCCTTGCAAGGTCCTGTTGC-GATCCCCGTGA 281358 Query 106094 AATAGTTGTTGCCAGTATAATTGGTCACGCCCGTCCACCCGCGGCCGTACATGGCAACTC 106153 || || | ||||||||| || || |||||||| || || ||||| ||||| | Sbjct 281357 AAGGATTACCATCTGTATAATTGTGTACTCCGGTCCACCCACGTCCATACATTGCAACAC 281298 Query 106154 CTACGATTATTTTGTTGGGATCGACGTCTTGTTTCAGCAACGCATCGACCGCGTAATGTG 106213 |||||| ||||| || || | || |||| || | | || || | | || Sbjct 281297 CTACGACAATTTTCTTCGGGTTTACACCTTGAGCCAATAGGTACTGAACACCGAAGTCTG 281238 Query 106214 TTGTGTATTTTTCTTCGGAATTCCAACTAGGCGCATATACCGTCGTTTGATAGCCCAGAT 106273 | || || |||| | || ||||| || ||||| | | ||||||| || | || Sbjct 281237 TGGTATAAGTTTCCTTTGAGTTCCACTCGGGAGCATACAGTGCGGTTTGATGACCTA-AT 281179 Query 106274 CTGTG-TTCGACCACGCCCCTTTAAAATCGTAACTCATGAGGAAAATTTTGTCCAAATAT 106332 | | || ||||| || || ||||| ||||| ||||| | ||||| | ||||| || Sbjct 281178 GTATCATTGGACCAAGCACCCTTAAAGTCGTAGCTCATAACAAAAATATGGTCCATGTAA 281119 Query 106333 TTTTGTGCGTCGTTATAGTTTACCACGGCAATTTTGTCGTAGCCCGCGCTTATAGCGCTG 106392 || || || | || |||| ||| || |||||||| | || || || ||||| Sbjct 281118 TTCTGCGCAGCTTTGTAGTCTACAACTTGGATTTTGTCCCATCCAGCACTAATAGCTGAT 281059 Query 106393 GTTAATTCGTAGAATTTGCCCGTTTGCAGTTC-TAATTCGTCTAGCATGGCGCGCAACTC 106451 ||||||||||| |||||| ||| || | |||||||| ||||| | || | ||| Sbjct 281058 GTTAATTCGTACTTCTTGCCCATTT-CATTGGATAATTCGTTAAGCATTTCTCGAAGCTC 281000 Query 106452 TTGCAACAGCACGACATATGTTTCGGCGTCGCGTTCCGCATCGCCCAAAGAAGGATTGGC 106511 | || | | ||||| ||| | || | | | | || | | || || || Sbjct 280999 CTTCATTAATAAAACATAGACTTCACCATCC---TTAGGACCACCAAGTGTCGGGTTTGC 280943 Query 106512 CCCTTTGCCGCCTGGAAATTCCCAATCTATATCGACGCCATCAAAAAATTTCCAAACTTG 106571 || || || || || |||||||| ||||| || || ||||| ||||||||||| ||| Sbjct 280942 GCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTCCAGGTTTG 280883 Query 106572 CAAAAATTCCTTTACAGAATTTAC-AAACACGTTTCTTTTTTCAACGTCATGCATAAAAT 106630 | || || |||||||| | | |||| || | || ||| | ||||| | || Sbjct 280882 AAGGAAGTCTTTTACAGAGTCAATGAAACGCGCT-CTCTTTACCTTGTCATCGAAGAAGA 280824 Query 106631 AGAAGGGGTCTGATAGCGTCCAACCGCCTATAGACGGAAGCACTTTTAAATGCGGATTTG 106690 |||| || || | || ||||||||||| ||||| ||||| | |||| || || ||| Sbjct 280823 AGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAGATCAGGTCTTG 280764 Query 106691 CCAATTTAGCCGCCATCAACTGTCCAAAGTTACCCTTGTAAGGCTCGTTCCAAGCGGACA 106750 | ||| | ||||||||| |||||||| || ||||| || || ||||| | || | Sbjct 280763 CTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAA 280704 Query 106751 CGCCTTTTTGCGGCTTCTGTATGGCAGCCCAGGGATCGTGAATAGAAACTTTAAAATCGG 106810 |||||||| || || |||| |||||||||||| |||||||| || |||||||| || Sbjct 280703 GTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTT 280644 Query 106811 CGCGCCCTTTGCATGATTTTTGCAAAGATTCAAAACTTCCCGGTATTGTTTTTAAGGCAT 106870 | || || |||| ||| | || || | || ||||||||| ||| ||| || | Sbjct 280643 CTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTCTTTCAAACTGT 280584 Query 106871 CGTTTATTCCATCACCGCCGCAGATGGGAATAAAACCGTACAATAAATGTGATAAATTGG 106930 |||| ||||||||||| || || || || |||||||||||||| | ||| | |||||| | Sbjct 280583 CGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCG 280524 Query 106931 GCAGCGGGACTTTATCTACGGGAAAATTGCGGCCATACACGCCCCATTCGACAAAATACG 106990 | | || | || |||||| | || | ||| || |||||||| ||||| || | Sbjct 280523 GGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAG 280464 Query 106991 C 106991 | Sbjct 280463 C 280463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425366703404892