Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq401 210 1e-49 >seq401 Length=384550 Score = 210 bits (232), Expect = 1e-49 Identities = 279/386 (72%), Gaps = 6/386 (2%) Strand=Plus/Plus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| ||| ||| |||||||| |||||||| | ||||| || | ||||| || | | Sbjct 358010 TCTACTCTCTTCATGAATAAATCAGGAATCCAAAGAGCATAGAAAAGCTCTCTGGCACGC 358069 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCAT 26041 | ||||||||| || |||||||||||| ||||| || ||||||||||| | |||||| Sbjct 358070 ACTTCTTCTTTCCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCAT 358129 Query 26042 GGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTT 26101 ||||||||||| |||||||| |||| |||||| ||| |||||||| || |||||| Sbjct 358130 GGTTCTAAATAAATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTT 358189 Query 26102 GCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTA 26161 ||||| | ||| | || | ||||| || ||||| ||| |||||| ||| ||||| | Sbjct 358190 GCAGTATTGTTGTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCG 358249 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCAT 26221 ||| | | ||| | | ||| ||| ||| |||| | ||| |||||||| || | Sbjct 358250 GCAATATATGTTCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGAC 358309 Query 26222 TTTGAAAT---AGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCT 26278 ||||| || ||||| | | | ||||| | || || | || || ||| || Sbjct 358310 TTTGATATTAATGCTGCTTGCTTT---AGGGTATCATAGATACCCTCAATACTGTCATCT 358366 Query 26279 TTCATTCCTAATAAAAAACAAGAAGA 26304 |||| | | ||||||||||||||| Sbjct 358367 CTCATAGCAATTAAAAAACAAGAAGA 358392 Score = 86.0 bits (94), Expect = 3e-12 Identities = 290/439 (66%), Gaps = 22/439 (5%) Strand=Plus/Plus Query 24686 GCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAA 24745 |||||||| || | | |||||||||||||||||| | | | ||||| | | |||| Sbjct 356807 GCTGGTTTTGTGCGCAAATAATACATTCCAGTTTTAAGCCCCATTTTCCATGCATGAAAA 356866 Query 24746 TGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAG----TTCATCGATTG 24801 || || ||||| | |||| || |||| | || | |||| | || | || || Sbjct 356867 TGAATAGATGTCAATTTTCCATAATTTGGT---TC-AGCAACATGAATATTAAAAGACTG 356922 Query 24802 AGCTTGG--CAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGAT 24859 |||| | ||| || || ||||| || || | | || ||||||| | || Sbjct 356923 -GCTTTGATCAATAAATGCGCCC-CTATCAGCTGCCATTTGGATCGTCGTTTTAACTGAA 356980 Query 24860 ATATCGTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGA 24919 || || | ||||||||||| ||| ||| || ||||||| ||| | ||||||||| Sbjct 356981 ATTTCCCAGACTGTTTTGTATAAGTCTCGTATTTCTTTTGGAATTCTTTCGATATTTTGA 357040 Query 24920 ACTGATCCATTTTCTCTCAATAGATTCAA----TCTCATATTCGGTGTCCAAAGAT-TAA 24974 | ||| ||||| | | | ||| ||| || | |||| | ||| |||| | Sbjct 357041 ATTGAACCATTGT-TATGAAT-GAT--AAGGTTTTTCATGTCTTCATCCCATAGATCTGC 357096 Query 24975 TTTTTTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTC 25034 || | || |||| | | | || | || | | ||||||||| |||||||||| Sbjct 357097 TTGCGTTAA-ATCTTTCAAAAGATGATGGTTCACTACTTGAAATTCTCCTGACAAAACTC 357155 Query 25035 TTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAG 25094 |||| ||| |||||| || || |||||||| ||||||||||||| | ||||| | Sbjct 357156 TTCTCTGATATATGTTTGATGTAAAAGGTTCAAAGGATTCATTATTTCCAAGAATTTGTG 357215 Query 25095 AAGTAGATGCTGTTGGCAT 25113 || ||||| || ||||| Sbjct 357216 CTGTGGATGCGGTAGGCAT 357234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253017339319100