Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq401 163 3e-35 >seq401 Length=384550 Score = 163 bits (180), Expect = 3e-35 Identities = 683/1054 (65%), Gaps = 43/1054 (4%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 |||||||||||||||| |||||| || || || | ||||||| || || || ||| | Sbjct 357843 GAGACTGGAACACCATTTATGCTGTATAAAGACTCATGTAACAGAAAAAGCAATCAACAA 357784 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 || | || ||||| || | ||||| ||||| |||||| |||| ||||| | Sbjct 357783 AACCTTGGCACAATTAAATGTAGCAATCTCTGCACAGAAATTGTAGAATACACCTCGGAA 357724 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||| |||||| || ||||| |||||||| || || | || |||||||||||| Sbjct 357723 GATGAAGTGGCTGTCTGTAATTTAGCATCAATAGCTCTCAACATGTTTGTCAATGAAGAC 357664 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | |||| ||| |||||| | | ||| |||| || | ||||| ||||| || Sbjct 357663 A---AAACTTACAATTTTGAAAAGTTAAAGGAAGTCACTAAAACAATTACCCAAAATTTA 357607 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTT-GAGACTGCGCGAAAGTCTAATATGCG 76203 ||| | | ||||| |||| ||||| ||| ||| || ||| || || ||| | Sbjct 357606 AACAAAATTATTGATGTGAATTACTATCCAGTTCCAGA-AGCTAAAAATTCAAACATGAG 357548 Query 76204 ACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTA 76263 ||||||||| ||||| | |||||||||||| | || ||| ||| |||| || || Sbjct 357547 ACACAGACCAATTGGGATTGGTGTTCAAGGTTTGGCTGATACATTCGTTTTAATGCGTTA 357488 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 ||| ||| || | || | | | ||| | || ||||| || || ||| | Sbjct 357487 TCCATATGAAAGTGAAAATGCAATTAAATTAAATCAACAAATATTTGAGACTATTTATTA 357428 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 | | || | || || || |||||||| || ||| ||||| || || ||| | Sbjct 357427 TGGAGCCTTAGAAGCAAGCTGTGAATTAGCAGAAAAAGAAGGTGTATACAGTACCTTTAA 357368 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTT--CAGTTTGATATGTGGGAAGGTGAAACCAAG 76441 | || ||| | ||| || || | |||||||| |||| | ||| | Sbjct 357367 AAAT--AGCCCTGTCAGTAATGGTATTTTGCAATATGATATGT-GGAATAAAATACCTA- 357312 Query 76442 CTCAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 76499 | | || | | |||| || ||| || || || | | || ||||||||| Sbjct 357311 CGGACCTTTGGAATTGGGTTGCTCTAAAAGAGAAAATTTCTAAACACGGGCTTCGTAAC- 357253 Query 76500 GTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 ||||| | | || || ||||| || || ||||| |||||||| | || |||||||| Sbjct 357252 -TCTTTGCTTTTAGCGCCTATGCCTACCGCATCCACAGCACAAATTCTTGGAAATAATGA 357194 Query 76558 ATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGT 76617 || ||||||||| | ||| ||||||| || | ||||||| | |||| || ||| Sbjct 357193 ATCCTTTGAACCTTTTACATCAAACATATATCAGAGAAGAGTTTTGTCAGGAGAATTTCA 357134 Query 76618 CATTGTCAACAAGCACCTCGTCAA----TGACCTCAAGAAGATTGGTCTCTGGTCCAAGG 76673 | || ||| | || || | || | | | |||| ||| ||| ||| | | Sbjct 357133 AGTAGTGAACCATCATCTTTTGAAAGATTTAACGCAAGCAGA----TCTATGGGATGAAG 357078 Query 76674 ATATGAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAG 76733 | ||||| | || || | | |||||| |||||||||||| | || ||| Sbjct 357077 ACATGAAAAACCTTATCATTCATAACAATGGTTCAATTCAAAATATCGAAAGAATTCCAA 357018 Query 76734 ATGATAT-CAAGAATCTCTACCGCACAGTGTGGGAAA-TCAAGATGAAA-GATGTCATTG 76790 | || || | ||| | | ||| ||||| ||||||| | || | ||| || | || Sbjct 357017 AAGAAATACGAGACT-TATACAAAACAGTCTGGGAAATTTCAGTTAAAACGACG--ATCC 356961 Query 76791 ACATGGCCGCAGATCGTGGTCGC-TTCATTGATCAAAGTCAAAGTATGAATCTATTCATG 76849 | ||||| || ||| | || ||| || ||||||||||| || | | || |||||||| Sbjct 356960 AAATGGCAGCTGATAG-GGGCGCATTTATTGATCAAAGCCAGTCTTTTAA--TATTCATG 356904 Query 76850 -----GAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGG 76904 ||| | || ||| || | | ||||| ||| | | || |||||| || Sbjct 356903 TTGCTGAA--CCAAATTATG-GAAAATTGACATCTATTCATTTTCATGCATGGAAAATGG 356847 Query 76905 GGCTCAAAACCGGAATGTACTATCTCCGATCAAA 76938 |||| ||||| |||||||| ||| | || |||| Sbjct 356846 GGCTTAAAACTGGAATGTATTATTTGCGCACAAA 356813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596514805082240