Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq429 113 8e-20 seq578 100 5e-16 >seq429 Length=186180 Score = 113 bits (124), Expect = 8e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||||||||| | || | ||| || | |||||| || || ||||| || | | Sbjct 15667 ATGTTATAGTCGGACAGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGC 15608 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 ||||| ||||| || ||||| || ||||| || || |||| || | |||| ||||| Sbjct 15607 TGTTGGTCAGGTGGGATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTG 15548 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| | ||| || ||||| || || || ||||| || || ||||| ||||| || ||| Sbjct 15547 TCGGAGGCCTCCACCTCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGC 15488 Query 193359 ATTTT 193363 || || Sbjct 15487 ATGTT 15483 >seq578 Length=1472074 Score = 100 bits (110), Expect = 5e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 193236 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATA 193295 ||||||||||| ||||| ||||||||||| ||||| ||||| | ||| | |||| || Sbjct 656165 CTCTGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCGATG 656106 Query 193296 GTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATT 193355 ||||| || | ||||| || ||||| || || || || || || |||||||| || || Sbjct 656105 GTATCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTACGAAGATC 656046 Query 193356 TGCATTTT 193363 ||||| || Sbjct 656045 TGCATCTT 656038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899571766743360