Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq53 114 2e-20 seq183 96.9 5e-15 >seq53 Length=2198565 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||||||||| || || | ||||| | || |||||||| || ||||||||||| ||| Sbjct 1830526 TAAAATGCAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGAACC 1830585 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||| || | ||| ||| || ||| |||||| || || || ||||| || || ||||| Sbjct 1830586 TTCAGACACCATTGAAAATGTTAAAGCTAAAATCCAGGACAAGGAAGGTATTCCACCAGA 1830645 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 || ||| | | || | ||| || |||||| | |||||| | | || | ||||| || Sbjct 1830646 CCAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTA 1830705 Query 155999 TAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || || || ||| ||| | || |||||| | |||||| | | ||||| || Sbjct 1830706 CAACAT-TCAAAAGGAGTCAACACTTCATCTTGTGTTACGTCTCAGAGGAGG 1830756 >seq183 Length=738700 Score = 96.9 bits (106), Expect = 5e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 18176 AAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCtt 18235 |||||| |||| || || || | ||| || || || |||| || ||||||| ||||| Sbjct 171514 AAACCT-CATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTC 171456 Query 18236 ttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAACGCACGCG 18295 ||||| ||||||||||| || || ||||| | ||| ||||| || |||||||| || Sbjct 171455 TTTTTCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCA 171396 Query 18296 AACGCTATTAATCTTTCAGCAAA 18318 || |||| | ||||||| |||| Sbjct 171395 AATGCTACAATTCTTTCACCAAA 171373 Score = 93.3 bits (102), Expect = 6e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508 ||||||||||| ||||||| ||||||| || |||||||| | ||| || |||| || Sbjct 171052 GAATACATTTCTGAATGTACATTTTCCATTGCAATCTGAAAGCCATAGAAACATCTGGCT 170993 Query 18509 TCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 || | ||| | ||| | || ||||| |||| ||| ||||| ||||| || || Sbjct 170992 TCTGTTACTTGTACCTCTTGGGAGAACCTTTCAACCAGATTTTCATTGACTATGCCATCT 170933 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTG 18628 | | || || || ||||| |||| |||||||| || | ||| ||||| ||| || Sbjct 170932 GATGCAGCAAAGAAAGCCAATACATGCTTAATGAAGTGCCTCTCACAGTCCTTTAGACTG 170873 Query 18629 TTCCATTCA 18637 | ||| ||| Sbjct 170872 TCCCAATCA 170864 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 17864 TTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 |||| ||| ||||||||||| || || ||||||||||| |||||||| | || || ||| Sbjct 173458 TTTTGGTACTCTCCGACTTTCTTTTCAAAGAAATTTGTTTTTCCTTCAAGAGAGATCAAA 173399 Query 17924 TTCATAAAATCAAATGGATT 17943 ||||| || ||||||||||| Sbjct 173398 TTCATGAAGTCAAATGGATT 173379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731804777556800