Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq183 136 8e-27 seq53 114 3e-20 seq429 105 1e-17 seq578 93.3 8e-14 >seq183 Length=738700 Score = 136 bits (150), Expect = 8e-27 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 49843 AACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCT 49902 || |||| ||||| || || | |||||| || || |||| || ||||||| |||||||| Sbjct 171514 AAACCTCATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTCT 171455 Query 49903 TTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAA 49962 |||| |||||||||||||| |||||||| | ||| ||||| || ||||| ||| |||| Sbjct 171454 TTTTCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCAA 171395 Query 49963 ATGCTATTATTCTTGCTCCAAACAT-TAATTTATCATCTAATATCCAATTTATAGCCCAA 50021 |||||| |||||| | ||||| | | | | | | |||||| | | ||||||| Sbjct 171394 ATGCTACAATTCTTTCACCAAATGTAGCAGATTTGCT-TGCTATCCACTGGAGAGCCCAA 171336 Query 50022 TCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 ||||| || || || | | | || | | | |||| ||| || ||||| Sbjct 171335 TCTGCCTTCTTCTTTACACATGGAAGAGTCTCTACAGCATTGAATAA 171289 >seq53 Length=2198565 Score = 114 bits (126), Expect = 3e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || ||||| |||||||| || | ||| | || | ||| ||| || || || || || Sbjct 1830759 ATTCCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGA-ATGTTGTAGTC 1830701 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| ||||| || || ||||||||||| | | || || || || Sbjct 1830700 TGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGG 1830641 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| || || || |||||| ||| ||||| || | ||||| | ||| Sbjct 1830640 TGGAATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTC 1830581 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 ||||||| || |||||||| || || | ||||| | || |||||||||||| Sbjct 1830580 AACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTTA 1830526 Score = 109 bits (120), Expect = 1e-18 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || || || || |||||||| || | ||| | || | || ||| || || || || || Sbjct 1830987 ATTCCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGA-ATGTTGTAGTC 1830929 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || | || || |||| ||||| || || ||||||||||| | | || || || || Sbjct 1830928 TGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGG 1830869 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 ||| || ||||| || ||||| |||||| ||| ||||| || | || || | ||| Sbjct 1830868 TGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTC 1830809 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 |||||||| || |||||||| || || | |||||||| || || |||||| Sbjct 1830808 CACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 >seq429 Length=186180 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || | ||| | || || || |||| |||| || || ||| ||||| || || Sbjct 15713 ACCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGA 15654 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| || | |||||||||||| || || || | |||||| |||||||| Sbjct 15653 CAGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGG 15594 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || ||||| || || || || ||||| |||| || || | || || Sbjct 15593 GATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCAC 15534 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| || ||||| ||||| || | ||||| | ||| |||||||| || Sbjct 15533 CTCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 >seq578 Length=1472074 Score = 93.3 bits (102), Expect = 8e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 192404 AGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACAT 192463 ||| | | ||||||||||| || || ||||||||||| ||||| |||||| ||| |||| Sbjct 656173 AGACTTACCTCTGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACAT 656114 Query 192464 TAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAA 192523 | || | ||| || | ||| || || ||||||||||| || || || | ||||| | Sbjct 656113 TTTCGATGGTATCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTA 656054 Query 192524 TAAATATCTGCATTTT 192539 || |||||||| || Sbjct 656053 CGAAGATCTGCATCTT 656038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984387314899800