Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq183 129 1e-24 seq53 116 7e-21 seq429 102 1e-16 seq578 96.9 6e-15 >seq183 Length=738700 Score = 129 bits (142), Expect = 1e-24 Identities = 115/143 (80%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 39144 AAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTC 39203 |||||| | ||||| || || | |||||| || || |||| || ||||||| ||||||| Sbjct 171514 AAACCT-CATCCCTTGAAATCATTTCATTGCTGAAGGTTAGGCCAGGCATTAGTCCTCTC 171456 Query 39204 TTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCA 39263 ||||| |||||||||||||| |||||||| | ||| ||||| || ||||| ||| ||| Sbjct 171455 TTTTTCAGCCAAAATATTGAAGCAAAACTTCCAGAGAAGAAAATTCCCTCAACAGCGGCA 171396 Query 39264 AATGCTATTATTCTTGCTCCAAA 39286 ||||||| |||||| | ||||| Sbjct 171395 AATGCTACAATTCTTTCACCAAA 171373 >seq53 Length=2198565 Score = 116 bits (128), Expect = 7e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| || ||||| || | ||| | || | ||| || ||| || || ||| Sbjct 1830759 ATTCCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCT 1830700 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || ||||| || || |||||||| || | | || ||||| ||| Sbjct 1830699 GAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGT 1830640 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || |||||| ||| ||||| || || ||||| | ||| Sbjct 1830639 GGAATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCA 1830580 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||||| || |||||||| || || | ||||| | ||| |||||||||||| Sbjct 1830579 ACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTTA 1830526 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 |||||||| || || | ||| | ||| || || | || || ||| || || ||||| Sbjct 1831212 CCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGAC 1831153 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | | ||| | || |||||||| || ||||| || || | | || ||||||||||| Sbjct 1831152 AGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGGA 1831093 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || ||||| |||||| ||| ||||| || || ||||| | ||| || Sbjct 1831092 ATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACC 1831033 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | || |||||||| || || | |||||||| || || |||||| Sbjct 1831032 TCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 >seq429 Length=186180 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || | ||| | || || || |||| |||| || || || ||||| || || Sbjct 15713 ACCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGA 15654 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || || | |||||||||||| ||||| || | ||||||||||||||| Sbjct 15653 CAGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGG 15594 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||| || ||||| || || || || ||||| ||||| || || | || || Sbjct 15593 GATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCAC 15534 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| || ||||| ||||| || | ||||| | || |||||||| || Sbjct 15533 CTCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATGTT 15483 >seq578 Length=1472074 Score = 96.9 bits (106), Expect = 6e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 171945 CTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATA 172004 |||||||| || || || ||||||||||| ||||| |||||| ||| ||||| || Sbjct 656165 CTCTGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCGATG 656106 Query 172005 GTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATC 172064 ||||| || | ||| || || ||||||||||| || || || | ||||| | ||| ||| Sbjct 656105 GTATCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTACGAAGATC 656046 Query 172065 TGCATTTT 172072 ||||| || Sbjct 656045 TGCATCTT 656038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905052863258400