Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq401 140 1e-27 seq109 134 4e-26 seq42 104 7e-17 seq66 87.8 5e-12 >seq401 Length=384550 Score = 140 bits (154), Expect = 1e-27 Identities = 681/1063 (64%), Gaps = 29/1063 (3%) Strand=Plus/Plus Query 155323 CAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTCAGATGTAAATG 155382 || ||||||| |||||||| || | || ||| | | | | || | ||| | | ||| Sbjct 357426 CATAATAAATAGTCTCAAATATTTGTTGATTTAATTTAATTGCATTTTCACTTTCATATG 357485 Query 155383 CGATATC-CATCTTGAAA--AATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGC 155439 |||| | ||| | ||| ||||| || || ||||| ||||| ||||| || | ||| | Sbjct 357486 -GATAACGCAT--TAAAACGAATGTATCAGCCAAACCTTGAACACCAATCCCAATTGGTC 357542 Query 155440 GATGCCTG-TAATTGCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCACATCAATAAT 155497 || || | ||| | || ||||| | ||| || |||||||||||||||| Sbjct 357543 TGTGTCTCATGTTTGAATTT--TTAGCTTCTGGAACTGGATAGTAATTCACATCAATAAT 357600 Query 155498 GTTATTTAAATTT---GTAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAA 155554 || ||||||||| |||| | || || || || ||| || || | | | Sbjct 357601 TTTGTTTAAATTTTGGGTAATTGTT---TTAGTGACTTCCTTTAACTTTTCAAAATTGTA 357657 Query 155555 TGTTTTATCCTCATTTACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGT 155614 ||||| || ||||| |||||||| ||| | || || || | |||||| || || Sbjct 357658 AGTTTTGTCTTCATTGACAAACATGTTGAGAGCTATTGATGCTAAATTACAGACAGCCAC 357717 Query 155615 CTCCTTGTCGTCGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCC 155674 || | || | ||||||||||||| || ||| || || || || || ||||| Sbjct 357718 TTCATCTTCCGAGGTGTATTCTACAATTTCTGTGCAGAGATTGCTACATTTAATTGTGCC 357777 Query 155675 TAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCC 155734 | || | || || ||| |||||||| | || || || || || |||| ||||| Sbjct 357778 AAGGTTTTGTTGATTGCTTTTTCTGTTACATGAGTCTTTATACAGCATAAATGGTGTTCC 357837 Query 155735 TGTCTCCATCTGTGCGTCCAGAAT--CTTTAGCCAGAGGTCACGGGCATTAATTTGCTTG 155792 ||||| | ||||| || | || |||| ||| | | ||| || ||| || Sbjct 357838 AGTCTCTACTTGTGCCTCAATTATAGCTTT--CCATAAAATTTGTGCACGAACTTGTTTA 357895 Query 155793 TTGTATCTGCCT-TCCGACTCATATTTCATATACAGCGTTCGGTAATCCT-CACCGTAAC 155850 || || | | || ||||||| ||||| | ||| ||| || | || | | Sbjct 357896 ACATA-CTTCTTCTCTTGTTCATATTGTTCATACAAC-TTCTCAAATTCTTCTCCCCAGC 357953 Query 155851 AATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTA 155910 | ||| || ||||| | || | || || | || |||| ||| || || Sbjct 357954 AGTCAGCGAGGCCAGGAGAATTGTGAGGACACATGAGACTCCAATTTTCGTTCTTTTCTA 358013 Query 155911 CACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACT 155970 | | || ||| |||| |||| ||||| |||||||||||| || | || | ||| Sbjct 358014 CTCTCTTCATGAATAAATCAGGAATCCAAAGAGCATAGAAAAGCTCTC-TGGCACGCACT 358072 Query 155971 CCTCATCGCCGTG-ATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGC 156029 || | || || |||||| ||| ||||| ||||| |||||||| ||| ||| Sbjct 358073 TCTTCTTTCCCTGTATTCTTTTTTAGGTCTAAAAATTCAAAAATATCAGCATGCCATGGT 358132 Query 156030 TCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGCA 156086 || | ||| |||||||| ||| | | || || || ||||| ||||| | ||| Sbjct 358133 TCTAAATAAATAGCAAATGCACCTGGTCTTTTATTTCCGCCTTGATCGACATATCTTGCA 358192 Query 156087 GTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGA 156146 || || ||| | || | || |||||| | | ||||| ||| ||||| |||||| | Sbjct 358193 GTATTGTTGTACACCCTTAACATAGGGACTAAGCCATTTGAAACTCCATTTGTTCCGGCA 358252 Query 156147 ATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTA 156206 |||| | || | | | | ||||| |||||| ||||| ||||||| | || Sbjct 358253 ATATATGTTCCCTTAGCTCTTATACAATGAACATGTAGACCAATTCCACCTGCAGACTTT 358312 Query 156207 GAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATT 156266 || ||| || || ||||| |||| | ||||| |||||| |||||| ||| Sbjct 358313 GATATTAATGCTGCTTGCTTTAGGGTATCATAGATACCCTCAATACTGTCATCTCTCATA 358372 Query 156267 GATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGT 156326 | | || | | || ||| | ||||||| |||||| | || ||| || || || Sbjct 358373 GCAATTAAAAAACAAGAAGACAGCTGAGGTCTAGGTGTTGCTGCTGAGAAAAGAGTTGGA 358432 Query 156327 GTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCT 156369 | |||||| |||| || || | ||| | ||| |||||||| Sbjct 358433 CTGGCATGAGTAAAGTATTTTTCAGATAACAAATTGTATGTCT 358475 >seq109 Length=1733701 Score = 134 bits (148), Expect = 4e-26 Identities = 228/326 (70%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || ||| |||| |||||||||||||||||||| || | | || |||| || | | Sbjct 1662544 CTCTTTCTACCCACAGCATCAATTTCGTCAATAAATAGAATGCATGGAGCATGCTTACGA 1662603 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 || |||| ||| | ||||| || | || | ||||| ||| ||| ||||||| | |||| Sbjct 1662604 GCCATTGAAAACATATCTCTAACTCTAGAAGGTCCAACACCTACAAACATTTCCAAAAAT 1662663 Query 289141 TCAGAAGCGGATAC--TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 || || | || || || || |||| ||||||||||| || || || | || | Sbjct 1662664 TCTGAGCCAGAAACAGTTAAA--AATGGAACATTTGCTTCCCCAGCAGTAGCTTTAGCAA 1662721 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCC 289258 | | |||||| ||||||||||| || || | || | ||||||| || | ||| |||| Sbjct 1662722 GCAATGTCTTTCCTGTTCCAGGAGGGCCAGTAAGTAAAGCTCCCTTAGGAATTTTAGCCC 1662781 Query 289259 CAGCAGAC-TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 | || | |||||| || |||| |||| | ||| | |||| ||| | |||| | Sbjct 1662782 C-TAAGTCAATATATTGCTGAGGGTTCTTCAGAAAGTTAACAAACTCCATTATTTCAATT 1662840 Query 289318 TTTGCCTCATCACATCCTGCTACATC 289343 || || || ||||| || |||||||| Sbjct 1662841 TTAGCTTCCTCACAGCCAGCTACATC 1662866 >seq42 Length=1713462 Score = 104 bits (114), Expect = 7e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| || ||||| || ||||||||||| ||||| ||| | | ||| ||| Sbjct 1000329 ATTGTCATACGAGATGGGATAGCGTGCGGATTGATGATAATGTCAGGTGTTAATCCTTCA 1000270 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 |||||| ||||| | ||| | || || || ||||| ||||||||||| ||||| Sbjct 1000269 CAAGTGAAAGGCATGT-CTTCTTGTCTGTATTGAATTCCACATGTTCCCTTTTGCCCGTG 1000211 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||||| ||||||||| ||||| ||| ||| || ||| | | || || || Sbjct 1000210 GCGAGAGGCGAACTTATCGCCAATTTGTGGAATGCGTACTGAACGTACTCTAATTTTGCA 1000151 Query 252024 GAAGTTGTAACCATCACCGTT 252044 ||| || ||||| |||| ||| Sbjct 1000150 GAATTTATAACCTTCACTGTT 1000130 Score = 87.8 bits (96), Expect = 5e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 252548 AATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGG 252607 |||| |||| ||||| || | || || || ||||||||||||||||| |||||||||| Sbjct 999614 AATTGGTAATATACACTCCCATAGCTTGTTTACCCATAGCACTCTGGTATGTATTTCTGG 999555 Query 252608 GAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTG 252667 | ||||||| || ||||||||||| |||||| ||| || || || | || Sbjct 999554 GGCTTTGATTGTGATCAGGGAAAGGAATAATTGATGCACAAACTCCTAATATCATAGCTG 999495 Query 252668 GGTGAATTTCACAGTG 252683 | || |||||||| || Sbjct 999494 GATGGATTTCACAATG 999479 >seq66 Length=1166317 Score = 87.8 bits (96), Expect = 5e-12 Identities = 179/266 (67%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 ||||||| || ||||| |||||| ||| || | ||| || ||||| || ||||| Sbjct 966712 ATCATAATTAACCATAACAGACTCCATAGCCTTTATGAGACGTCGTTGAATGTATCCAGT 966771 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || ||||||||||| |||||||| ||||| | ||||| |||||||| || ||| | Sbjct 966772 TTCAGCAGTTTTTACAGCAGTATCAATAAGACCCTCTCGACCTCCCATAGCGTGAAAGTA 966831 Query 302673 TAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG 302732 | ||| ||| | || ||| | | || | || || || || | | ||||| Sbjct 966832 AAACTCCGAAGGTGTCAAACCAGCAAGATAAGAATTTTCTACAAAGCCCCTAGATTCGGG 966891 Query 302733 CGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACG 302792 || || ||| | || || |||| ||||| || | ||| |||| ||||| Sbjct 966892 ACCATAATCATCTTTGATGAAATGGGGCAATGTCCTTTTACGGAAACCGAATGGAATACG 966951 Query 302793 CTTTCCATCAACGTTCTGCTGTCCCA 302818 || || || |||||||| || |||| Sbjct 966952 TTTACCTTCCACGTTCTGTTGACCCA 966977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471679033892276