Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1660 129 7e-24 seq20 113 6e-19 seq4797 87.8 2e-11 >seq1660 Length=2032 Score = 129 bits (142), Expect = 7e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || |||||| ||| | || | ||||| |||||| | |||||| | || Sbjct 635 GCTTGGCGAGCTCGCCGGGCAGCAGGAGCCTCACGGAGGTCTGCACCTCGCGGGACGTGA 576 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || |||||| ||||| | |||| | |||| | Sbjct 575 TCGTCGAACGCTTGTTGTAGTGTGCGAGACGGGACGCCTCCGCCGCGATCCTCTCGAAGA 516 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||||| ||| ||||| || |||||| | Sbjct 515 TGTCGTTCACGAACGAGTTCATGATTGACATCGCCTTCGAAGAGATACCGGTGTCGGGAT 456 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| || |||||||||||| Sbjct 455 GCACCTGCTTCAGTACCTTGTAGATG 430 >seq20 Length=420337 Score = 113 bits (124), Expect = 6e-19 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || ||| | || | ||||| |||||| | |||||| | || Sbjct 10919 GCTTGGCGAGCTCACCAGGCAGAAGGAGCCTCACGGAGGTCTGCACCTCGCGGGACGTGA 10860 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 |||| |||||||| |||| || |||||| ||||| | |||| | |||| | Sbjct 10859 TCGTCGAACGCTTGTTGTAGTGAGCGAGACGGGACGCCTCCGCCGCGATCCTCTCGAAGA 10800 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| | ||||| ||| ||||| || |||||| | Sbjct 10799 TGTCGTTCACGAACGAGTTCATGATTGTCATCGCCTTTGAAGAGATACCGGTGTCGGGAT 10740 Query 1254523 GCACCTGCTTGAGCACCTTGTAGAT 1254547 |||||||||| ||||||||||| || Sbjct 10739 GCACCTGCTTTAGCACCTTGTAAAT 10715 >seq4797 Length=337 Score = 87.8 bits (96), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || ||||||||||||| ||||||| ||| ||||| || |||||||| Sbjct 337 TGTCGTTCACGAACGAGTTCATGATTGACATCGCCTTCGAAGAGATACCGGTGTCGGGGT 278 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| || |||||||||||| Sbjct 277 GCACCTGCTTCAGTACCTTGTAGATG 252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106536188709316