Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_021865.1 Length=41294 Score E Sequences producing significant alignments: (Bits) Value seq3031 147 6e-31 seq7042 143 7e-30 seq7348 138 3e-28 >seq3031 Length=34777 Score = 147 bits (162), Expect = 6e-31 Identities = 278/405 (69%), Gaps = 12/405 (3%) Strand=Plus/Minus Query 18515 CAGAGATTATTAAGATGGGATAGGCGTCCCCCTAATGAAATTCTTATAAATGGGTTTGTT 18574 |||||||| | |||||||||||| | || || ||||| || || || ||||||||||| Sbjct 16371 CAGAGATTGCTTAGATGGGATAGGAGACCGCCAAATGAGATATTTTTAGATGGGTTTGTT 16312 Query 18575 CCACAAGTTATAAATGCAGATCCTAGTCTGGAAGAAACAAACTTGTTTAGGTATGTAAAA 18634 ||| || | || | ||||| | |||||| || |||||| | | || |||| Sbjct 16311 CCAATTGTGACAAGAGAGAATCCTGATTGGGAAGAGACGGACTTGTACGGTTTTGCAAAA 16252 Query 18635 TCAAATACAAAATCTATATTTGTTTCGACCACAAAAACGAAATATAAAAACGGTAAAAGG 18694 ||| || || ||||| || || |||||||| | | | |||| |||| | Sbjct 16251 AATAATCACCCTTCCATCTTTGTATCAACGACAAAAAC---ACAAAGAAACAAAAAAAAG 16195 Query 18695 TATCAGCCTTGGAGCCCAAGAACAAGGGATAA---TGGAATTGTATACCAGTATGAGATT 18751 ||| | | |||| || ||||| | ||| ||||| || || || || || ||| Sbjct 16194 TAT--GTC-TGGACACCGAGAAC---TGCTAACCGCGGAATAGTTTATCAATACGAAATT 16141 Query 18752 TTTGCGCCGGGAGGTGTAGATGTGAACAGGTCTTTTGGAGAACAATCTCCGTGGCCAAAT 18811 | ||| || ||||| |||||||| || |||||| | | |||| || ||||| ||| Sbjct 16140 TATGCCCCTGGAGGAGTAGATGTCAATGAGTCTTTATTACAGGAATCACCTTGGCCTAAT 16081 Query 18812 CAGCTAGAAGTAGCTTTTCCAGGAGGAATTCGTCCCGAATTTATTCGATCTGTTCGAGAA 18871 || | || || || ||||| |||||||| | | || || |||| | ||||| Sbjct 16080 CAAATGGAGGTTGCATTTCCTGGAGGAATACAAAACATATACATAAGATCAGCAAGAGAA 16021 Query 18872 CTGCAGAATGGTCGAATTCAAAGAATTTGGATAAACCCAAACTTT 18916 || || | ||||| || ||||| ||||||||||||||||||||| Sbjct 16020 CTCCACGACGGTCGTATACAAAGGATTTGGATAAACCCAAACTTT 15976 Score = 122 bits (134), Expect = 2e-23 Identities = 281/418 (67%), Gaps = 18/418 (4%) Strand=Plus/Minus Query 18513 GGCAGAGATTATTAAGATGGGATAGGCGTCCCCCTAATGAAATTCTTATAAATGGGTTTG 18572 |||| ||||| | ||||||||||| | || || ||||| || || || | || |||| Sbjct 9791 GGCAAAGATTGCTTAGATGGGATAGAAGACCGCCAAATGAGATATTTTTAGAAGGTTTTG 9732 Query 18573 TTCCACAAGTTATAAATGCAGA---TCCTAGTCTGGAAGAAACAAACTTGTTTAGGTATG 18629 ||||| || ||| | ||| |||| | ||| || || | |||| | | | || Sbjct 9731 TTCCAA---TTGTAACTAGAGAGAATCCTGATTGGGAGGAGACCGATTTGTATGGTTTTG 9675 Query 18630 TAAAATCAAATACAAAATCTATATTTGTTTCGACCACAAAAACGAAATATAAAAACGGTA 18689 ||| ||| || | ||||| || || |||||||| || | |||| | Sbjct 9674 CGAAAAATAATCACCCTTCCTTCTTTGTGTCAACAACAAAAACACAA---AGAAACAAAA 9618 Query 18690 AAAGGTATCAGCCTTGGAGCCCAAGAACAAGGGATAAT---GGAATTGTATACCAGTATG 18746 ||| |||| | || ||| || ||||| | ||| ||||| || || || || | Sbjct 9617 AAAAGTAT--GTCT-GGACACCGAGAACT---GCTAACCGCGGAATAGTTTATCAATACG 9564 Query 18747 AGATTTTTGCGCCGGGAGGTGTAGATGTGAACAGGTCTTTTGGAGAACAATCTCCGTGGC 18806 | |||| ||| || ||||| |||||||| || |||||| | | |||| || |||| Sbjct 9563 AAATTTATGCCCCTGGAGGAGTAGATGTCAATGAGTCTTTATTACAGGAATCACCATGGC 9504 Query 18807 CAAATCAGCTAGAAGTAGCTTTTCCAGGAGGAATTCGTCCCGAATTTATTCGATCTGTTC 18866 | ||||| | || || || |||||||||||||| | || ||| |||| | | Sbjct 9503 CTAATCAAATGGAGGTTGCGTTTCCAGGAGGAATACAAAATATATATATAAGATCAGCTA 9444 Query 18867 GAGAACTGCAGAATGGTCGAATTCAAAGAATTTGGATAAACCCAAACTTTCAAGACCC 18924 ||||||| || | ||||| || ||||| ||||||||||||||||| ||| ||| || Sbjct 9443 GAGAACTCCACGACGGTCGTATACAAAGGATTTGGATAAACCCAAATTTTTTAGATCC 9386 Score = 118 bits (130), Expect = 3e-22 Identities = 282/424 (67%), Gaps = 28/424 (7%) Strand=Plus/Minus Query 18513 GGCAGAGATTATTAAGATGGGATAGGCGTCCCCCTAATGAAATTCTTATAAATGGGTTTG 18572 |||| ||||| | ||||||||||| | || || |||||||| || | | || |||| Sbjct 21752 GGCAAAGATTGGTCAGATGGGATAGAAGACCGCCAAATGAAATATTTTTGGAAGGATTTG 21693 Query 18573 TTCCACAAGTTATAAATGCAGATCCTAGTCTGGAAGAAACAAACTTGTTTAGGTATGTAA 18632 | || || | || | || || | |||||| ||| |||||| | | | || || Sbjct 21692 TACCCATTGTGACAAGGGAGGACCCGGATTGGGAAGAGACAGACTTGTATGGTTTTGCAA 21633 Query 18633 AATCAAATACAAAA--TCTATATTTGTTTCGACCACAAAAAC-----GAAATATAAAAAC 18685 || || || | || | |||||||| || |||||||| |||||| ||||| Sbjct 21632 AA--AATAACCATCCGTCCGTGTTTGTTTCAACAACAAAAACTCAAAGAAATAAAAAAA- 21576 Query 18686 GGTAAAAGGTATCAGCCTTGGAGCCCAAGAA----CAAGGGATAATGGAATTGTATACCA 18741 || | || ||||| || ||| ||| || || || ||||| || Sbjct 21575 ---AATATGT-------TTGGACACCTAGATGTGCCAACGGC----GGTATAGTATATCA 21530 Query 18742 GTATGAGATTTTTGCGCCGGGAGGTGTAGATGTGAACAGGTCTTTTGGAGAACAATCTCC 18801 || || |||| ||| || ||||| || ||||| || |||||| | | |||| || Sbjct 21529 ATACGAAATTTATGCTCCTGGAGGAGTCGATGTCAATGAGTCTTTATTACATGAATCACC 21470 Query 18802 GTGGCCAAATCAGCTAGAAGTAGCTTTTCCAGGAGGAATTCGTCCCGAATTTATTCGATC 18861 ||||| | ||| | || || || ||||| |||||||||| || ||| |||| Sbjct 21469 TTGGCCTACTCAAATGGAGGTTGCATTTCCTGGAGGAATTCAAAATATATATATAAGATC 21410 Query 18862 TGTTCGAGAACTGCAGAATGGTCGAATTCAAAGAATTTGGATAAACCCAAACTTTCAAGA 18921 | |||| || || ||||| |||||||||||||||||||||||||||| ||| || Sbjct 21409 AGCAAGAGAGCTTCATAATGGAAGAATTCAAAGAATTTGGATAAACCCAAATTTTTTGGA 21350 Query 18922 CCCA 18925 |||| Sbjct 21349 CCCA 21346 Score = 107 bits (118), Expect = 5e-19 Identities = 279/422 (66%), Gaps = 15/422 (4%) Strand=Plus/Minus Query 18513 GGCAGAGATTATTAAGATGGGATAGGCGTCCCCCTAATGAAATTCTTATAAATGGGTTTG 18572 |||| ||||| | ||||||||||| | || || |||||||| || | | || |||| Sbjct 31250 GGCAAAGATTGCTCAGATGGGATAGAAGACCACCAAATGAAATATTTTTGGAAGGATTTG 31191 Query 18573 TTCCACAAGTTATAAATGCAGATCCTAGTCTGGAAGAAACAAACTTGTTTAGGTATGTAA 18632 |||| || | || | || || | |||||| ||| |||||| | | | || || Sbjct 31190 TTCCCATTGTGACAAGGGAGGACCCGGATTGGGAAGAGACAGACTTGTATGGTTTTGCAA 31131 Query 18633 AATCAAATACAAAATCTATATTTGTTTCGACCACAAAAAC-----GAAATATAAAAACGG 18687 || || || | |||||||| || |||||||| |||||| ||||| Sbjct 31130 AAAGTAACCACCCTTCCTTCTTTGTTTCAACTACAAAAACACAAAGAAATAGAAAAAATA 31071 Query 18688 -TAAAAGGTATCAGCCTTGGAGCCCAAGAACAAGGGATAAT---GGAATTGTATACCAGT 18743 ||||| |||| ||||| || |||| | | || || || ||||| || | Sbjct 31070 ATAAAAAGTATGT---TTGGACACCTAGAA---GTGCCAACCGCGGTATAGTATATCAAT 31017 Query 18744 ATGAGATTTTTGCGCCGGGAGGTGTAGATGTGAACAGGTCTTTTGGAGAACAATCTCCGT 18803 | || |||| ||| || ||||| || ||||| || |||||| | | |||| | | Sbjct 31016 ACGAAATTTATGCTCCTGGAGGAGTCGATGTCAATGAGTCTTTATTACATGAATCACGTT 30957 Query 18804 GGCCAAATCAGCTAGAAGTAGCTTTTCCAGGAGGAATTCGTCCCGAATTTATTCGATCTG 18863 || | ||| | || || || ||||| |||||||||| || ||| |||| | Sbjct 30956 GGAATACTCAAATGGAGGTTGCATTTCCTGGAGGAATTCAAAATATATATATAAGATCAG 30897 Query 18864 TTCGAGAACTGCAGAATGGTCGAATTCAAAGAATTTGGATAAACCCAAACTTTCAAGACC 18923 |||| || | ||||| ||||||||||||||||||||||||| || ||| |||| Sbjct 30896 CAAGAGAGCTTCGTAATGGAAGAATTCAAAGAATTTGGATAAACCCTAATTTTTTGGACC 30837 Query 18924 CA 18925 || Sbjct 30836 CA 30835 >seq7042 Length=3798 Score = 143 bits (158), Expect = 7e-30 Identities = 340/509 (67%), Gaps = 15/509 (3%) Strand=Plus/Minus Query 18513 GGCAGAGATTATTAAGATGGGATAGGCGTCCCCCTAATGAAATTCTTATAAATGGGTTTG 18572 |||| ||||| | ||||||||||| | || || ||||| || || ||||||| || | Sbjct 3625 GGCAAAGATTGCTTAGATGGGATAGAAGACCGCCAAATGAGATATTTTTAAATGGATTCG 3566 Query 18573 TTCCACAAGTTATAAATGCAGATCCTAGTCTGGAAGAAACAAACTTGTTTAGGTATGTAA 18632 ||||| || | || | | || | |||||| ||| |||||| | | | || || Sbjct 3565 TTCCAATTGTGACAAGAGAGTACCCGGATTGGGAAGAGACAGACTTGTATGGTTTTGCAA 3506 Query 18633 AAT-CAAATACAAAATCTATATTTGTTTCGACCACAAAAAC-----GAAATATAAAAACG 18686 || ||| || || | |||||||| || |||||||| |||||| ||||| Sbjct 3505 AAAGCAACCACCCTTCCT-TCTTTGTTTCAACAACAAAAACTCAAAGAAATAAAAAAAA- 3448 Query 18687 GTAAAAGGTATCAGCCTTGGAGCCCAAGAACAAGGGATAAT---GGAATTGTATACCAGT 18743 ||||| | | ||||| || |||| | | || || || ||||| || | Sbjct 3447 -TAAAAAAAAGTATGTTTGGACACCTAGAA---GTGCCAACCGCGGTATAGTATATCAAT 3392 Query 18744 ATGAGATTTTTGCGCCGGGAGGTGTAGATGTGAACAGGTCTTTTGGAGAACAATCTCCGT 18803 | || |||| ||| || ||||| || ||||| || |||||| | | |||| || | Sbjct 3391 ACGAAATTTATGCTCCTGGAGGAGTCGATGTCAATGAGTCTTTATCACATGAATCACCTT 3332 Query 18804 GGCCAAATCAGCTAGAAGTAGCTTTTCCAGGAGGAATTCGTCCCGAATTTATTCGATCTG 18863 |||| ||||| | || || || ||||| |||||||||| || ||| |||| | Sbjct 3331 GGCCTAATCAAATGGAGGTTGCGTTTCCTGGAGGAATTCAAAATATATATATAAGATCAG 3272 Query 18864 TTCGAGAACTGCAGAATGGTCGAATTCAAAGAATTTGGATAAACCCAAACTTTCAAGACC 18923 ||||||| || | || ||||||||||||||||||||||| ||||| ||| || | Sbjct 3271 CAAGAGAACTCCAAGACGGACGAATTCAAAGAATTTGGATAAATCCAAATTTTTTGGATC 3212 Query 18924 CAGGAAACTTAGAAGGAATATCAGCTTCATCTAGTACAGAACAAGTAATGTGGCACCCAG 18983 | || | |||||| || | |||| || | || | || || ||| | Sbjct 3211 CCGGCGAATTAGAACCCATTGCTTCTTCTTCACGAACTCCTAATGTTATATGGAGTGAAA 3152 Query 18984 ACCATCCAGATGGTAATCATAAAGATCCT 19012 |||| || |||||||||||||||||| || Sbjct 3151 ACCACCCTGATGGTAATCATAAAGATTCT 3123 >seq7348 Length=685177 Score = 138 bits (152), Expect = 3e-28 Identities = 278/407 (68%), Gaps = 18/407 (4%) Strand=Plus/Minus Query 18513 GGCAGAGATTATTAAGATGGGATAGGCGTCCCCCTAATGAAATTCTTATAAATGGGTTTG 18572 |||| || || | ||||||||||| | || || |||||||| || || | ||||||| Sbjct 2372 GGCAAAGGTTGATTAGATGGGATAGAAGACCGCCAAATGAAATATTTTTAGAAGGGTTTG 2313 Query 18573 TTCCACAAGTTATAAATGCAGA---TCCTAGTCTGGAAGAAACAAACTTGTTTAGGTATG 18629 ||||| || ||| | ||| |||| | || || ||| |||| | | | | || Sbjct 2312 TTCCAA---TTGTAACTAGAGAGAATCCTGATTGGGCGGAGACAGACTTATATGGTTTTG 2256 Query 18630 TAAAATCAAATACAAAATCTATATTTGTTTCGACCACAAAAACG-AAATATAAAAACGGT 18688 | ||| ||| ||| || || ||||| || |||||||| ||| | ||||| Sbjct 2255 TGAAAAATAATCATCCATCAATCTTCGTTTCAACAACAAAAACACAAAGACAAAAA---- 2200 Query 18689 AAAAGGTATCAGCCTTGGAGCCCAAGAACAAGGGATAAT---GGAATTGTATACCAGTAT 18745 || ||| | | ||||| || |||| | | | | || || ||||| || || Sbjct 2199 AATAGGAAATATGTTTGGACACCGAGAA---GTGCCAGTCGCGGTATAGTATATCAATAC 2143 Query 18746 GAGATTTTTGCGCCGGGAGGTGTAGATGTGAACAGGTCTTTTGGAGAACAATCTCCGTGG 18805 || |||| ||| || |||||||| ||||| ||| ||||||| ||| ||| || ||| Sbjct 2142 GAAATTTATGCTCCTGGAGGTGTTGATGTAAACGATTCTTTTGCAGATGCATCACCATGG 2083 Query 18806 CCAAATCAGCTAGAAGTAGCTTTTCCAGGAGGAATTCGTCCCGAATTTATTCGATCTGTT 18865 | ||||| | ||||| || ||||| |||||||| | || ||||||||| | Sbjct 2082 CATAATCAAATGGAAGTTGCGTTTCCTGGAGGAATACAAAATATATATATTCGATCAGCA 2023 Query 18866 CGAGAACTGCAGAATGGTCGAATTCAAAGAATTTGGATAAA-CCCAA 18911 | ||||| || || || |||||||||||||||||| |||| ||||| Sbjct 2022 AGGGAACTACATAACGGACGAATTCAAAGAATTTGGTTAAATCCCAA 1976 Score = 129 bits (142), Expect = 2e-25 Identities = 292/434 (67%), Gaps = 24/434 (6%) Strand=Plus/Minus Query 18513 GGCAGAGATTATTAAGATGGGATAGGCGTCCCCCTAATGAAATTCTTATAAATGGGTTTG 18572 |||| |||||| | ||||||||||| | || || ||||| || || || | || |||| Sbjct 9011 GGCAAAGATTAGTTAGATGGGATAGAAGACCGCCAAATGAGATATTTTTAGACGGATTTG 8952 Query 18573 TTCCACAAGTTATAAATGCAGA---TCCTAGTCTGGAAGAAACAAACTTGTTTAGGTATG 18629 ||||| || ||| | ||| |||| | ||| |||||| | |||| | | | || Sbjct 8951 TTCCAA---TTGTAACTAGAGAGAATCCTGATTGGGAGGAAACAGATTTGTATGGTTTTG 8895 Query 18630 TAAAATCAAATACAAA--ATCTATATTTGTTTCGACCACAAAAACGAAATATAAAAACGG 18687 ||| || || | ||| || |||||||| || |||||||| || | |||| Sbjct 8894 CGAAA--AATAACCATCCATCCATCTTTGTTTCAACAACAAAAACACAA---AGAAACAA 8840 Query 18688 TAAAAGGTATCAGCCTTGGAGCCCAAGAA----CAAGGGATAATGGAATTGTATACCAGT 18743 |||| |||| ||||| || |||| ||| | || || ||||| || | Sbjct 8839 AAAAAAGTATGT---TTGGACACCGAGAAATGCCAACCGG----GGTATAGTATATCAAT 8787 Query 18744 ATGAGATTTTTGCGCCGGGAGGTGTAGATGTGAACAGGTCTTTTGGAGAACAATCTCCGT 18803 |||| |||| ||| || ||||| || || || ||| || || ||| ||| || | Sbjct 8786 ATGAAATTTATGCCCCTGGAGGAGTTGACGTAAACGATTCCTTCTCAGATGCATCGCCAT 8727 Query 18804 GGCCAAATCAGCTAGAAGTAGCTTTTCCAGGAGGAATTCGTCCCGAATTTATTCGATCTG 18863 |||| ||||| | || || || ||||| |||||||| | || ||||||||| | Sbjct 8726 GGCCTAATCAAATGGAGGTTGCCTTTCCTGGAGGAATACAAAATATATATATTCGATCAG 8667 Query 18864 TTCGAGAACTGCAGAATGGTCGAATTCAAAGAATTTGGATAAACCCAAACTTTCAAGACC 18923 | ||||| || || || || |||||||||||||||||||| || || || | || | Sbjct 8666 CAAGGGAACTACATAACGGACGCATTCAAAGAATTTGGATAAATCCCAATTTCCTGGATC 8607 Query 18924 CAGGAAACTTAGAA 18937 | || | |||||| Sbjct 8606 CCGGTGATTTAGAA 8593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132007680334656