Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq94 188 6e-43 seq326 178 1e-39 seq129 131 1e-25 >seq94 Length=616059 Score = 188 bits (208), Expect = 6e-43 Identities = 134/154 (87%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34490 TGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGC 34549 |||| || ||||| ||||||||||| | ||| |||||||||||||||||||||||||| Sbjct 225812 TGGCAGGTCGTCCTAGCGCCTTGGCCACCTCGATCATGTTGACGATGACAGTCTTGATGC 225753 Query 34550 CGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 | || ||||| || || ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 225752 CATTCCCCTTCCCCTCAACCTTGGCGCAGATGCGCGGCATCTTGTAGCGGTAGAACGCGT 225693 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 |||||||||| ||||| ||||| | | |||||| Sbjct 225692 CCGCCACATTCCGGTTCACGTTTAAGGACCCCAT 225659 Score = 131 bits (144), Expect = 1e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34201 GCCGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGA 34260 ||||| ||||| || || ||||||||||||||||| || ||||| ||| |||||| Sbjct 227301 GCCGGAGGGTTCTTGAGGATGAAGGTGTTGAGCTTGTGGTTGAAGTCGAGCTGGCCGTGG 227242 Query 34261 TAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCA 34320 || || || || ||||| ||||| | || |||| || | |||||||| ||||| Sbjct 227241 TACCCACAAGCCTTGCAACCCTGCGATATCGTGTTGCGCTTCGTCGACACGATCAGCTCC 227182 Query 34321 GTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAA 34367 ||||| |||||||| || |||||||||| ||| || ||||||||||| Sbjct 227181 GTCTCTGGGTTGTCGCACTCCGGACACAGCACGAATTTGCGGATGAA 227135 >seq326 Length=503882 Score = 178 bits (196), Expect = 1e-39 Identities = 531/807 (66%), Gaps = 17/807 (2%) Strand=Plus/Plus Query 28881 CATCTGTTATACGGCTTCGTACCTATTTGCGGCGGCGACGGGCTCAACGACGCCCTTAAA 28940 ||||| || ||||| || | || ||||| || || || || |||||||| | ||| Sbjct 280535 CATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAACGACAGTTTGAAA 280594 Query 28941 ACCATACCCGGTAGTTTTGAAGCGCTGCAACGTTCGTGCAACGGCCGTTCAGATTTTAAA 29000 || || ||||| ||||| | || | || |||| ||||| ||| |||||| Sbjct 280595 GAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGAGAAGACTTTAAA 280654 Query 29001 GTTGCTATTCACGATCCTTGGGCCGCAATACAAAAACCGCAAAAGGGCGTGTCTGCGTGG 29060 || | |||||||| || ||||| || |||||||||| ||||| || | ||| | ||| Sbjct 280655 GTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGACTTTCTTCCTGG 280714 Query 29061 AACGAGCCCTACAAAGGCAATTTCGGTCAGCTCATGGCTGCCAAGTTGGCCAATCCACAC 29120 || || || ||||||||||| || || ||| | ||| || || || | || | Sbjct 280715 AATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAAGCAAGACCTGAT 280774 Query 29121 ATCAAAATTCTACCGTCCATAGGCGGCTGGACATTGTCCGACCCTTTTTATTTTATGCAC 29180 | || ||||| || || || ||||| ||||| | | || || || | || | | Sbjct 280775 CTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTCTTCTTCTTCGAT 280834 Query 29181 GACGCGG-AGAAACGGCGCGTGTTTGTGGACTCGGTCGAGGAATTTTTGCAGGTGTGGAA 29239 ||| || | | | |||||| || | ||||| || | || || | || ||||| Sbjct 280835 GACAAGGTAAAGAGAGCGCGT-TTCATTGACTCTGTAAAAGACTTCCTTCAAACCTGGAA 280893 Query 29240 ATTTTTTGACGGCGTAGACATTGACTGGGAATTTCCGGGCGGTAAAGGCGCTAACCCGAC 29299 |||||| || || |||||||| ||||||||||| || || ||||| ||||| |||||||| Sbjct 280894 ATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGGCGCAAACCCGAC 280953 Query 29300 ACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTACTGAAGGAATTGCGCGC 29359 |||||| || || | || ||| | ||| ||||||| | || | Sbjct 280954 ACTTGG---TGGTCCTAAGGATGGTGAAGTCTATGTTTTATTAATGAAGGAGCTTCGAGA 281010 Query 29360 AATGCTGGATAAACT-GCAATTGCAAACGGGTAAAACGTATGAATTGACAAGCGCAATCA 29418 |||||| | || | | | || ||| ||| || | ||| ||||| ||| || || | Sbjct 281011 AATGCTTAACGAATTATCCAATG-AAATGGGCAAGAAGTACGAATTAACATCAGCTATTA 281069 Query 29419 GCTCTGGCCACGACAAAATTGCTGTAGTGAAATACGACGTTGTGCAAAAATTTCTTGATA 29478 | |||| |||||||| || || | ||| | | || ||| || | | || Sbjct 281070 GTGCTGGATGGGACAAAATCCAAGTTGTAGACTACAAAGCTGCGCAGAATTACATGGACC 281129 Query 29479 AAATATTTCTAATGAGTTACGATTTTAAAGGCGCATGGTCAAACACCGAT---TTGGGAT 29535 | || ||| | ||||| ||||| ||||| || || ||||| || ||| || || Sbjct 281130 ATATTTTTGTTATGAGCTACGACTTTAAGGGTGCTTGGTC---CAATGATACATTAGGTC 281186 Query 29536 ATCAAACTACACTCTACGC-ACCGAGTTGGAATCCCAACGAGCTTTACAACACTGACCAC 29594 ||||||| |||| || || ||||| ||||| | || || ||| | ||| ||| | Sbjct 281187 ATCAAACCGCACTGTATGCTCCCGAG-TGGAACTCAAAGGAAACTTATACCACAGACTTC 281245 Query 29595 GCCGTAAAGTCGCTCACTAAC-CAAGGCGTGGACCCGCGCAAAATTATTGTGGGCGTCGC 29653 | || ||| || | | | ||||| || ||||| |||||| | || || || || Sbjct 281246 GGTGTTCAGTACCT-ATTGGCTCAAGGTGTAAACCCGAAGAAAATTGTCGTAGGTGTTGC 281304 Query 29654 CATGTACGGCCGCGGTTGGACGGGCGT 29680 ||||| || || || ||||| || || Sbjct 281305 AATGTATGGACGTGGGTGGACCGGAGT 281331 >seq129 Length=3256488 Score = 131 bits (144), Expect = 1e-25 Identities = 180/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 103670 GAAGCTGCGCGTTTGCGCACTTTTACCGCGTGGCCGCGCGGTTTGAAGCAACATCCCGAG 103729 || ||||| ||| | ||||| ||| ||| ||||| | || || ||| | ||||| Sbjct 1155747 GAGGCTGCTCGTCTTCGCACCTTTGCCGATTGGCCTAGAAGTATGCGCCAAAAGCCCGAA 1155688 Query 103730 ATACTTGCCGAAGCTGGTTTCTTTTACACCGGCAAAAGCGACAAAGTCAAATGCTTTTAC 103789 ||| || |||||||| || || ||||| || | |||||||| ||||||||||||| Sbjct 1155687 GAACTGGCGGAAGCTGGCTTTTTCTACACGGGTCACGGCGACAAAACCAAATGCTTTTAC 1155628 Query 103790 TGCAACGGCGGTCTGAACAATTGGGAGCAAGATGACGACCCGTGGCAACAACACGCGCTT 103849 || | || || ||||| | ||||| | || |||| ||| ||| | |||||||| | | Sbjct 1155627 TGTGATGGGGGCCTGAAGGACTGGGAAAATGACGACGTCCCATGGGAGCAACACGCCCGT 1155568 Query 103850 TGGTTCGGACGCTGCGCATACGTGCTACTTGTCAAAGGCCACGATTATGTACAAAAGGTC 103909 ||||| | || ||||| ||||| | | || ||||| | ||| || ||||| || ||| Sbjct 1155567 TGGTTTGACCGATGCGCTTACGTCCAGTTAGTGAAAGGTCGCGACTACGTACAGAAAGTC 1155508 Query 103910 GTGACCGAATCG 103921 | ||||| || Sbjct 1155507 TTAGCCGAAGCG 1155496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412804628486564