Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1660 167 4e-35 seq20 152 8e-31 seq191 86.0 1e-10 seq143 86.0 1e-10 seq6 86.0 1e-10 >seq1660 Length=2032 Score = 167 bits (184), Expect = 4e-35 Identities = 184/243 (76%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| |||||||||| |||| || |||||| ||| Sbjct 674 TGTACTTGGTGACGGCCTTGGTGCCCTCGCTGACGGCGTGCTTGGCGAGCTCGCCGGGCA 615 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | |||||||| |||||| |||||||| ||| Sbjct 614 GCAGGAGCCTCACGGAGGTCTGCACCTCGCGGGACGTGATCGTCGAACGCTTGTTGTAGT 555 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| ||||| | |||| | |||| |||||||| || |||||||| Sbjct 554 GTGCG--AGACGGGACGCCTCCGCCGCGATCCTCTCGAAGATGTCGTTCACGAACGAGTT 497 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||||| || ||||| || |||||| ||||||||||| || ||||| Sbjct 496 CATGATTGACATCGCCTTCGAAGAGATACCGGTGTCGGGATGCACCTGCTTCAGTACCTT 437 Query 1485708 GTA 1485710 ||| Sbjct 436 GTA 434 >seq20 Length=420337 Score = 152 bits (168), Expect = 8e-31 Identities = 182/245 (74%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| ||| |||||| |||| || || || ||| Sbjct 10958 TGTATTTGGTGACGGCCTTGGTGCCCTCGCTGACAGCGTGCTTGGCGAGCTCACCAGGCA 10899 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT 1485587 | || | ||||| |||||| | |||||||| |||||| |||||||| ||| Sbjct 10898 GAAGGAGCCTCACGGAGGTCTGCACCTCGCGGGACGTGATCGTCGAACGCTTGTTGTAGT 10839 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | ||| || ||| ||||| | |||| | |||| |||||||| || |||||||| Sbjct 10838 GAGCG--AGACGGGACGCCTCCGCCGCGATCCTCTCGAAGATGTCGTTCACGAACGAGTT 10781 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| | ||||| || ||||| || |||||| ||||||||||| |||||||| Sbjct 10780 CATGATTGTCATCGCCTTTGAAGAGATACCGGTGTCGGGATGCACCTGCTTTAGCACCTT 10721 Query 1485708 GTAAA 1485712 ||||| Sbjct 10720 GTAAA 10716 >seq191 Length=1024003 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 996254 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 996313 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 996314 CTCACCCGGGGCATATC 996330 >seq143 Length=532421 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 151517 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 151576 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 151577 CTCACCCGGGGCATATC 151593 >seq6 Length=643904 Score = 86.0 bits (94), Expect = 1e-10 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||| ||| ||||| | || ||||| | ||||||||||||||||| Sbjct 484968 GCCTCGGTGGCGCAGTAGGCAGCGCGTAAGTCTCATAATCTTAAGGTCGTGAGTTCGATC 485027 Query 1812844 CTCACCCGAGGTATATC 1812860 |||||||| || ||||| Sbjct 485028 CTCACCCGGGGCATATC 485044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915464759725772