Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq326 129 4e-25 seq53 120 2e-22 seq429 118 7e-22 >seq326 Length=503882 Score = 129 bits (142), Expect = 4e-25 Identities = 209/299 (70%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 6231 CATCAGCTGGCCAAAGTTACCCTTGTACTCTTCGTTGTACGCCTCAACACCTTTCTGTGG 6290 ||||| |||||||||||| || ||||| ||| || | | || ||||| ||||| Sbjct 280750 CATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATTCCAGGAAGAAAGTCCTTTTTGTGG 280691 Query 6291 TTTTTGCAACGCGGCCCAGATGTCGTGAATACTTACCTTGAAGTCATCGCGACCAGCGCA 6350 |||||| || || |||||| ||||||||| ||| || ||||| || || ||| ||| Sbjct 280690 TTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATACTTTAAAGTCTTCTCGGCCACTGCA 280631 Query 6351 GGATTTCTGTAGCGCCTCAAAGGAATT--GGGAATCTGCTTGAGGGCGTCGTTTATGCCG 6408 ||| |||||| ||| | || | || ||| | || | |||||| || || Sbjct 280630 AGATCTCTGTAACGCTTGGAA--ACTTCCCTCAATTTCTTTCAAACTGTCGTTGATTCCA 280573 Query 6409 CTACCACCACAAATTGGAATGAACCCGTACAGCAGGTGCGTCAGATTAGGTATTGGTACC 6468 |||||||||||| || || || ||||||| || || || | ||| || ||||||| Sbjct 280572 TCACCACCACAAATCGGGATAAAACCGTACAAAAGATGAGTTAAATTCGGGATTGGTATA 280513 Query 6469 TTGTCAATGGGAAACTGTCTGCCATACACTCCCCACTCCACGAAATACGCACCGACGAC 6527 ||| | |||| ||| ||| ||| |||||||| || || || || ||||| || || Sbjct 280512 CGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTCAACAAAGTAAGCACCAACAAC 280454 >seq53 Length=2198565 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAA-TGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 |||||||||| | | | || || |||| || || | ||||| |||||||| ||||| Sbjct 1830986 TTCCTCCCCTGAGACGTAACACAAGATGAAGTGTTGAT-TCCTTTTGAATGTTGTAGTCT 1830928 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| |||| |||| |||| |||||||| || ||||| || |||||||||||| | Sbjct 1830927 GAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGT 1830868 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | ||||| |||||| | | || | ||| ||| || Sbjct 1830867 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCC 1830808 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || | ||| ||||| || || ||||| || || || || || ||||| Sbjct 1830807 ACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| ||||| || ||| |||| |||| |||| |||||||| || || Sbjct 1830721 CTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAA 1830662 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| || |||||||||||| | || | || |||||||| | ||||| ||| || Sbjct 1830661 GATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTAGCTTTAACATT 1830602 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | | || | || | || || || | || ||||| |||||||| || || ||||| Sbjct 1830601 TTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTAC 1830542 Query 34966 AAAGATCTGCAT 34977 ||||||||||| Sbjct 1830541 GAAGATCTGCAT 1830530 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||| |||||||| ||||| || || | || |||| |||| ||||||||| |||||| Sbjct 1831176 TCCTTTTGAATGTTGTAGTCTGACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAG 1831117 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || ||||||||||| | || | || |||||||| | ||||| ||| || | Sbjct 1831116 ATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTT 1831057 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | || || || | || ||||| ||||| || || || || ||| Sbjct 1831056 TCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACA 1830997 Query 34967 AAGATCTGCAT 34977 || || ||||| Sbjct 1830996 AAAATTTGCAT 1830986 >seq429 Length=186180 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | | ||||| |||| ||| | || |||||||| ||||||||||| || Sbjct 15712 CCTCCACGAAGCCTCAACACCAAGTGTAGTGTAGATTCCTTCTGGATGTTATAGTCGGAC 15653 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | ||| |||| || ||||| || || ||||| |||| || || ||||| | || Sbjct 15652 AGGGTACGCCCATCTTCAAGTTGTTTACCAGCGAAAATCAAACGCTGTTGGTCAGGTGGG 15593 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | |||||||| || | || || || || | | || | || |||||| || Sbjct 15592 ATTCCCTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAGGCCTCCACC 15533 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| ||||||||||| || ||||||||||||||| Sbjct 15532 TCTAGGGTGATGGTCTTACCCGTGAGGGTTTTCACAAAGATCTGCATG 15485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325663632988412