Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq326 226 2e-54 seq129 176 4e-39 >seq326 Length=503882 Score = 226 bits (250), Expect = 2e-54 Identities = 583/877 (66%), Gaps = 11/877 (1%) Strand=Plus/Plus Query 29072 TGCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCT 29131 ||| || ||||| |||||||| || ||| | || | ||| || ||| | || | Sbjct 280462 TGCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAAT 280521 Query 29132 GCCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAA 29191 || || | | ||||| ||||||||||| || || ||||| || || || || |||| Sbjct 280522 CCCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAA 280581 Query 29192 CGACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCG 29251 |||| | ||| ||| || ||||| | ||| | || | ||||||| ||||| Sbjct 280582 CGACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCG 280641 Query 29252 TTCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGG 29311 ||| || ||||| | |||||||| || ||||| || |||||||||| ||||| || Sbjct 280642 AGAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGG 280701 Query 29312 CGTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCT 29371 | ||| | ||||| || || |||||||| ||||| || ||| | ||| | || | Sbjct 280702 ACTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACA 280761 Query 29372 GGCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTT 29431 || | || | || || ||||| || || || ||||| ||||| | | || || || Sbjct 280762 AGCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATT 280821 Query 29432 CTATTTCATGCACGACGCGG-AAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTTC 29490 || ||| | | ||| || ||| | ||| || || | ||||| || | ||| || | Sbjct 280822 CTTCTTCTTCGATGACAAGGTAAAGAGAGCGCGT-TTCATTGACTCTGTAAAAGACTTCC 280880 Query 29491 TGCAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAG 29550 | || ||||| ||||| || || || |||||||||||||| || || || || || | Sbjct 280881 TTCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGG 280940 Query 29551 GCGCCAACCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATTTTACTAA 29610 |||| |||||||||||||| || || | || ||| | ||| | | Sbjct 280941 GCGCAAACCCGACACTTGG---TGGTCCTAAGGATGGTGAAGTCTATGTTTTATTAATGA 280997 Query 29611 AGGAATTGCGCGCAATGATGGACGAGTTA-CAATTGCAAACGGGCAAAACGTACGAGTTG 29669 |||| | || | |||| | |||| ||| | | || ||| |||||| | |||||| || Sbjct 280998 AGGAGCTTCGAGAAATGCTTAACGAATTATCCAATG-AAATGGGCAAGAAGTACGAATTA 281056 Query 29670 ACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGCAA 29729 ||| || || ||| | ||| ||||| || || || | ||| | |||||||| Sbjct 281057 ACATCAGCTATTAGTGCTGGATGGGACAAAATCCAAGTTGTAGACTACAAAGCTGCGCAG 281116 Query 29730 AAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGT-CAAACAC 29788 || | | || | || || | ||||||||||| ||||| || || |||| ||| | Sbjct 281117 AATTACATGGACCATATTTTTGTTATGAGCTACGACTTTAAGGGTGCTTGGTCCAATGAT 281176 Query 29789 CGATTTGGGCTACCAAACTACTCTCTACGC-GCCGAGTTGGAACCCAAACGAACTGTACA 29847 ||| || | | ||||| | || || || ||||| |||||| |||| ||| || | Sbjct 281177 ACATTAGGTC-ATCAAACCGCACTGTATGCTCCCGAG-TGGAACTCAAAGGAAACTTATA 281234 Query 29848 ACACGGACCACGCCGTTAAGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTATTG 29907 ||| ||| || ||| ||| || | || || || ||||| |||||| | | Sbjct 281235 CCACAGACTTCGGTGTTCAGTACCTATTGGCTCAAGGTGTAAACCCGAAGAAAATTGTCG 281294 Query 29908 TGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGT 29944 | || || || ||||| || || || ||||| || || Sbjct 281295 TAGGTGTTGCAATGTATGGACGTGGGTGGACCGGAGT 281331 >seq129 Length=3256488 Score = 176 bits (194), Expect = 4e-39 Identities = 341/499 (68%), Gaps = 11/499 (2%) Strand=Plus/Minus Query 103580 TACTTGGGCCGCGGCGACGAAGTGCGCTGCGCGTTTTGCAAAGTGGAGATTATGCGCTGG 103639 ||| | || | ||||||||||||||| ||||| || || || ||||| || ||| | ||| Sbjct 1156002 TACCTCGGTCACGGCGACGAAGTGCGTTGCGCCTTCTGTAAGGTGGAAATAATGAGATGG 1155943 Query 103640 GAGGAGGGCGACGACCCGGCTCGCGATCATCAGAGGTGGGCGCCGCAGTGTCCGTTCCTG 103699 | ||||| || ||||| |||| |||||| | ||||||||||||||||| || ||| Sbjct 1155942 GTCGAGGGAGATGACCCAGCTCAGGATCATAGTCGCTGGGCGCCGCAGTGTCCCTTTCTG 1155883 Query 103700 aaa---aaaaCGGCTGCTGG---CGCGCTGCCCGCCGGCCTTGCGATGGACGGGCAGGAC 103753 | | | | || |||||| || | | || | || | | || | ||| Sbjct 1155882 AGACGTCAGATGGGTGCTGGAAACGTCCCTCTCGATGCAACTGTCAGCGGAGGTCGCGAC 1155823 Query 103754 GAGTGCGGCGTGAGCGCGCTGCCGT-CCACCAACGCCTGCGTGCGCATGCCCGGCCCCGC 103812 || ||||| ||||| |||| | || | | ||||| ||||| ||||| ||||| | Sbjct 1155822 GAATGCGGTGTGAGAGCGC--CAGTAACCGCGGCGCCT--GTGCGTATGCCAGGCCCAGT 1155767 Query 103813 GCACCCTCGGTTCGCCTCCGAGGCCTCAAGGTTACAAACTTTTAAGGATTGGCCCCGGAG 103872 ||| | | | ||| |||||||| | | | | || ||| |||||||| | || Sbjct 1155766 ACACTCCAGATACGCGTCCGAGGCTGCTCGTCTTCGCACCTTTGCCGATTGGCCTAGAAG 1155707 Query 103873 TCTGAAACAGAAACCGGAGAAGATGGCCGAAGCCGGATTCTACTACACCGGCCACAGCGA 103932 | || || || || || | |||| ||||| || || | |||||| || ||| |||| Sbjct 1155706 TATGCGCCAAAAGCCCGAAGAACTGGCGGAAGCTGGCTTTTTCTACACGGGTCACGGCGA 1155647 Query 103933 CAACACGAAATGCTTCTACTGCGACGGTGGTCTAAAGGATTGGGAGCACGATGATGAGCC 103992 ||| || |||||||| ||||| || || || || ||||| ||||| | || || | || Sbjct 1155646 CAAAACCAAATGCTTTTACTGTGATGGGGGCCTGAAGGACTGGGAAAATGACGACGTCCC 1155587 Query 103993 GTGGCAACAACACGCGCTTTTCTTTCGCCGTTGCGCATACGTGCTACTTGTCAAGGGCCA 104052 ||| | |||||||| | || ||| ||| ||||| ||||| | | || || || | Sbjct 1155586 ATGGGAGCAACACGCCCGTTGGTTTGACCGATGCGCTTACGTCCAGTTAGTGAAAGGTCG 1155527 Query 104053 CGATTATGTACAAAAGGTC 104071 ||| || ||||| || ||| Sbjct 1155526 CGACTACGTACAGAAAGTC 1155508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398841079086772