Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq326 255 5e-63 seq53 156 3e-33 >seq326 Length=503882 Score = 255 bits (282), Expect = 5e-63 Identities = 642/968 (66%), Gaps = 27/968 (3%) Strand=Plus/Plus Query 45112 GCTTATTTCGTTGAATGGGGAGTGTATGGGCGCAATTTTCCTATGAACCGCGTGCCAGTG 45171 ||||| || |||||||||||||| ||| | || | ||| || |||| | ||| | Sbjct 280463 GCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAATC 280522 Query 45172 CCGAACCTTACGCATTTGTTATACGGTTTTATTCCTATATGCGGTGGCGATGGCATTAAT 45231 ||||| | || ||| | || ||||||||||| || || || ||||| ||||| || || Sbjct 280523 CCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAAC 280582 Query 45232 GACAGTCTTAAAACGATTACAGGCAGTTTTGAAGCGTTGCAAAAATCGTGCGCCGGCCGC 45291 |||||| | ||| ||| || ||||| ||||||| || | ||| ||| ||||| Sbjct 280583 GACAGTTTGAAAGAAATTGAGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGA 280642 Query 45292 TCAGATTTCAAAGTGAGCATTCACGACCCATGGGCCGCTGTGCAAAAACCACAAAAAGGC 45351 ||| || ||||| |||||||||||| ||||| || | ||||||||||||||||| Sbjct 280643 GAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGA 280702 Query 45352 GTTTCTGCTTGGAACGAACCGTATAAAGGCAATTTTGGACAAATCATGGCTGTAAAACGG 45411 ||||| | ||||| ||||| || |||||||| ||||| || | ||| || |||||| Sbjct 280703 CTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAA 280762 Query 45412 GCAAATCCTCATTTAAAAGTGTTGCCATCGATTGGCGGCTGGACGCTGTCCGATCCGTTT 45471 |||| ||| || |||| | | || || |||||||| ||||| || | ||||| || Sbjct 280763 GCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTC 280822 Query 45472 TACCATTTGCACGATGCGG---AGAAACGCGCTTTGTTTGTGGAATCCGTGCGCGAATT- 45527 | | || | || || ||| | |||| | || | || || || || || Sbjct 280823 TTCTTCTTCGATGACAAGGTAAAGAGA-GCGCGT--TTCATTGACTCTGTAAAAGACTTC 280879 Query 45528 -TTTAACTACGTGGAAATTTTTTGACGGAGTCGATATAGATTGGGAGTTTCCCGGCGGCA 45586 || || || ||||||||||| || || || || ||||| ||||| || || || || | Sbjct 280880 CTTCAA--ACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTA 280937 Query 45587 ATGGCGCCAATCCATCGGTGGGCGATCCAGAACGCGACGGTCTCACTTATGTAGCACTGC 45646 | ||||| || || | | || | ||| | || ||| ||||| | | Sbjct 280938 AGGGCGCAAACCCGACACTTGGTGGTCCTAA---GGATGGTGAAGTCTATGTTTTATTAA 280994 Query 45647 TGCGCGATTTGCGCGACATGCTCGATCAATTGGCGCACGAAACCGGTCGGCGCTACGAAC 45706 || || | || || ||||| | |||| | | |||| || | |||||| Sbjct 280995 TGAAGGAGCTTCGAGAAATGCTTAACGAATTATCCAATGAAATGGGCAAGAAGTACGAAT 281054 Query 45707 TGACTACGGCTATAAGCGCCGGTGACGACAAAATCGCTTTGGTAGATTATCAAGACGCGC 45766 | || | ||||| || || || ||||||||| | ||||| || ||| |||| Sbjct 281055 TAACATCAGCTATTAGTGCTGGATGGGACAAAATCCAAGTTGTAGACTACAAAGCTGCGC 281114 Query 45767 AAACTTATCTCGATCGAATCTTTTTAATGACGTATGATTTTAAAGGCGCTTGGTCGAACT 45826 | | ||| | || | || ||| | |||| || || ||||| || |||||||| || Sbjct 281115 AGAATTACATGGACCATATTTTTGTTATGAGCTACGACTTTAAGGGTGCTTGGTCCAA-- 281172 Query 45827 CGGAT---TTGGGCCATCAAACGGCCGTGTACGCGCCAGAATGGAATCGCGACGAGCGTT 45883 ||| || || |||||||| || |||| || || || ||||| | || || Sbjct 281173 -TGATACATTAGGTCATCAAACCGCACTGTATGCTCCCGAGTGGAACTCAAAGGAAACTT 281231 Query 45884 ACACAGTCGACTACGCGGTGCA----CGTTTTGCTCGAAAAACGGGTAAAGCCTCAAAAA 45939 | || |||| || || || | || |||| || | ||||| || | ||| Sbjct 281232 ATACCACAGACTTCGGTGTTCAGTACCTATTGGCTC----AAGGTGTAAACCCGAAGAAA 281287 Query 45940 ATCGTGCTCGGCGTGGCAATGTACGGTCGCGGCTGGACCGGAGTAATTAACTATCAAGAC 45999 || || | || || |||||||| || || || |||||||||||| || ||| ||| Sbjct 281288 ATTGTCGTAGGTGTTGCAATGTATGGACGTGGGTGGACCGGAGTACACAATTATACAGAT 281347 Query 46000 GACAACCCGTTTACCGGCATCGCAACCGGGCCCGTGTCCGGCACTTGGGAAGACGGTGTG 46059 | || || || || || |||||||| || || ||||| ||| | || |||||| Sbjct 281348 GGTAATCCTTTCACGGGGATCGCAACAGGACCTTGCAAGGGCACATGGCAGGATGGTGTG 281407 Query 46060 ATCGATTA 46067 ||||||| Sbjct 281408 GTCGATTA 281415 >seq53 Length=2198565 Score = 156 bits (172), Expect = 3e-33 Identities = 174/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||||||||| | ||| | ||| | |||||| || ||||| ||||||||||| || || | Sbjct 1830985 TCCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGA 1830926 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || | || || |||||| | || | | |||||| || || || Sbjct 1830925 AAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGG 1830866 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||| || |||||||| |||||| | ||||||| |||| | |||||||| ||| | Sbjct 1830865 AATACCTTCCTTGTCTTG-AATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCA 1830807 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| || || || |||||||| || | |||||||| || || |||||| Sbjct 1830806 CTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 Score = 140 bits (154), Expect = 2e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| || | ||| | ||| | |||||| || || || ||||||||||| || || | Sbjct 1830757 TCCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGA 1830698 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || |||||| ||| || | || || |||||| | || | | |||||| || || || Sbjct 1830697 AAGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGG 1830638 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || ||||| || | ||| ||| ||| |||| | ||||| ||| |||| || Sbjct 1830637 AATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAAC 1830578 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 ||| | || || ||||| || || | ||||| || || ||||||||||||||| Sbjct 1830577 TTCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATTTTAAAA 1830523 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| || || | ||| | || ||||| ||||||||||| || || | Sbjct 1831212 CCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGAC 1831153 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | ||| || ||||| | || | | |||||| || || ||| Sbjct 1831152 AGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGGA 1831093 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || |||||||| | ||| ||| ||| |||| | ||||| ||| |||| || Sbjct 1831092 ATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACC 1831033 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | || || ||||| || || | ||||||||||| || |||||| Sbjct 1831032 TCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385184702176068