Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq326 201 1e-46 seq53 113 4e-20 >seq326 Length=503882 Score = 201 bits (222), Expect = 1e-46 Identities = 369/537 (69%), Gaps = 8/537 (1%) Strand=Plus/Minus Query 19020 GGGTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCGAAGAATTTC 19079 ||||| ||||| || || || || || ||||| || || || || |||||||| |||||| Sbjct 280950 GGGTTTGCGCCCTTACCTCCAGGGAATTCCCAGTCTATGTCTACACCATCGAAAAATTTC 280891 Query 19080 CACGTTTCTAGATACTCTTGGACTGAATCGAT-AAACG---TCTGCCGTACGATCTTGTC 19135 || |||| || | |||| || || || || ||||| ||| | ||| |||||| Sbjct 280890 CAGGTTTGAAGGAAGTCTTTTACAGAGTCAATGAAACGCGCTCT-CTTTAC---CTTGTC 280835 Query 19136 GTGCATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAG 19195 | | | | ||||| || | || ||||| || || || ||||| || | ||||| Sbjct 280834 ATCGAAGAAGAAGAATGGATCAGCGAGGGTCCAACCGCCAATAGAAGGAAGAATCTTTAG 280775 Query 19196 ATGAGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTT 19255 || ||| | || ||| | ||| | |||||||||||||||||||| ||||| || Sbjct 280774 ATCAGGTCTTGCTTGTTTTAAAGACATCAACTGGCCAAAGTTGCCTTTGTATGGTTCATT 280715 Query 19256 CCATGCGCTGACACCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCAC 19315 ||| | | |||||||| ||||| |||| ||| ||||| || |||||||||| || Sbjct 280714 CCAGGAAGAAAGTCCTTTTTGTGGTTTTTGTAAGGCAGCCCAGGGGTCGTGAATGGATAC 280655 Query 19316 TTTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGT 19375 ||| ||||| | || || || || | || ||||||| |||||| ||| | Sbjct 280654 TTTAAAGTCTTCTCGGCCACTGCAAGATCTCTGTAACGCTTGGAAACTTCCCTCAATTTC 280595 Query 19376 TTTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATG 19435 ||| | || ||||| || || ||||| || || || | ||||||||||| | ||| Sbjct 280594 TTTCAAACTGTCGTTGATTCCATCACCACCACAAATCGGGATAAAACCGTACAAAAGATG 280535 Query 19436 CGACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTC 19495 | || ||||| | || | || |||||| ||| || ||||| || |||||||| Sbjct 280534 AGTTAAATTCGGGATTGGTATACGGTCCACGGGATACTTTCTAGGATAAACTCCCCATTC 280475 Query 19496 GACAAAGTATGCACCTATAATCTTGTCCGAGCGCTTTTCGAACCGTTTATTGTTTTC 19552 |||||||| ||||| | || ||| | || || || ||| | |||| ||||| Sbjct 280474 AACAAAGTAAGCACCAACAACCTTTCCAGACGTCTGTTTGAATGGCTTATGTTTTTC 280418 >seq53 Length=2198565 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| | | ||| || || | ||||| ||| ||||| ||||| |||||||| || Sbjct 1830984 CCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAA 1830925 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | || || |||||| |||| ||||||||||| || || || Sbjct 1830924 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830865 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| ||| | | ||| | ||||| | || ||| ||| Sbjct 1830864 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACT 1830805 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| || | |||||| ||||| |||||||| Sbjct 1830804 TCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | ||| || || | ||||| ||| || || ||||| |||||||| || Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | || || |||||| |||| ||||||||||| || || || Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||| ||| | | ||| | ||||||| ||||| ||| Sbjct 1830636 ATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACT 1830577 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || | ||||||||||| || ||||| Sbjct 1830576 TCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137181 ATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC 137240 || ||| |||| | ||| | || | ||| | || ||||| ||||| |||||||| || Sbjct 1831216 ATTGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGTTGTAGTC 1831157 Query 137241 GCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGG 137300 || || | ||||| | ||| || ||||| |||| ||||||||||| || || Sbjct 1831156 TGACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGG 1831097 Query 137301 AGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTC 137360 || || ||||| ||||| ||||| ||| | | ||| | ||||||| ||||| Sbjct 1831096 TGGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTC 1831037 Query 137361 TACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || | || | || || || |||| |||||| || || |||||||| Sbjct 1831036 AACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCAT 1830986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488499127233600