Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq53 147 4e-30 seq578 104 5e-17 >seq53 Length=2198565 Score = 147 bits (162), Expect = 4e-30 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 || |||| | || ||||||| ||| || || | |||| || ||||| || || || | Sbjct 1831223 TTCATCAATTGCCACCTCTCAGACGGAGTACAAGATGCAAGGTTGATTCCTTTTGAATGT 1831164 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 | || || || || ||| || ||||| | ||| |||||||| ||||| || | ||| | Sbjct 1831163 TGTAGTCTGACAGCGTTCGGCCATCTTCCAATTGCTTTCCAGCGAAGATAAGACGTTGCT 1831104 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 | || || || || |||||||| ||||| || || ||||| ||||||||||| || || Sbjct 1831103 GGTCAGGTGGAATACCTTCCTTGTCTTGGATTTTAGCTTTAACATTTTCAATGGTGTCTG 1831044 Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||| || ||||| || || || || ||||||| || || ||||| || |||||| Sbjct 1831043 AAGGTTCAACCTCCAATGTGATGGTTTTTCCTGTCAGTGTTTTAACAAAAATTTGCATT 1830985 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| | || | || || || || || || || || || || || || Sbjct 1830756 CCTCCTCTGAGACGTAACACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCTGAA 1830697 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | || |||||||||||||| || | ||| || ||||| || Sbjct 1830696 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830637 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || || || ||||| ||||||||||| || || |||||| ||| Sbjct 1830636 ATACCTTCCTTGTCCTGGATTTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACT 1830577 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || || || || || | || ||||| || ||||||||| Sbjct 1830576 TCTAATGTGATGGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCATT 1830529 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| | || | || || || ||||| || || || || || || || Sbjct 1830984 CCTCCCCTGAGACGTAACACAAGATGAAGTGTTGATTCCTTTTGAATGTTGTAGTCTGAA 1830925 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| | || |||||||||||||| || | ||| || ||||| || Sbjct 1830924 AGGGTGCGGCCATCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGA 1830865 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| |||||||| || ||||| ||||||||||| || ||| | ||| ||| Sbjct 1830864 ATACCTTCCTTGTCTTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACT 1830805 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || || |||||||| | || || || || || |||||| Sbjct 1830804 TCTAGGGTGATGGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCATT 1830757 >seq578 Length=1472074 Score = 104 bits (114), Expect = 5e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || |||||||||||||| |||||||| || |||||||| || ||||| |||||||| || Sbjct 656165 CTCTGTTGATCTGGAGGGATTCCTTCTTTGTCTTGAATTTTAGCTTTAACATTTTCGATG 656106 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 ||||| ||||| || || | ||| || ||||| || || | || ||||| || ||| Sbjct 656105 GTATCCGAGGGTTCAACCTCAAGAGTAATGGTCTTCCCCGTGAGAGTTTTTACGAAGATC 656046 Query 82806 TGCAT 82810 ||||| Sbjct 656045 TGCAT 656041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981734764650972