Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq326 140 3e-28 seq53 98.7 1e-15 >seq326 Length=503882 Score = 140 bits (154), Expect = 3e-28 Identities = 329/493 (67%), Gaps = 8/493 (2%) Strand=Plus/Plus Query 24800 GCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTGCCCGCG 24859 || |||||||| || ||||| || || || | ||| |||||| ||| | || Sbjct 280463 GCTTACTTTGTTGAATGGGGAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAATC 280522 Query 24860 CCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGCATCAAC 24919 || || | | || | | ||||| ||| | || || || || || | || |||||| Sbjct 280523 CCGAATTTAACTCATCTTTTGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAAC 280582 Query 24920 GA---TGCGCTAAAAACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGCGCCGGC 24976 || | | | ||| || | || || ||| | ||| | || |||| ||| ||| Sbjct 280583 GACAGTTTGAAAGAAATTGAG---GGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGC 280639 Query 24977 CGCGCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAGAAA 25036 || | ||||| || || |||| ||||| || ||||| ||| |||| ||||| || ||| Sbjct 280640 CGAGAAGACTTTAAAGTATCCATTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAA 280699 Query 25037 GGCGTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTGAAG 25096 || | || | ||||| || || ||||| ||||||||||||||| ||||| | | || Sbjct 280700 GGACTTTCTTCCTGGAATGAACCATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAA 280759 Query 25097 CGCGCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGACCCG 25156 | || || | || || | || || || || ||||| ||||| || | || || Sbjct 280760 CAAGCAAGACCTGATCTAAAGATTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCA 280819 Query 25157 TTCTTCCACATGCACGACAAGGCGGCGCGCCAGACGTTT-ATCGACTCGGTGCAAGAGTA 25215 |||||| | | | ||||||| | | | ||||| || ||||| || |||| | Sbjct 280820 TTCTTCTTCTTCGATGACAAGGTAAAGAGAGCG-CGTTTCATTGACTCTGTAAAAGACTT 280878 Query 25216 CCTCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGGCAA 25275 ||| |||||||| || || || || || ||| | || ||||| || || || || || Sbjct 280879 CCTTCAAACCTGGAAATTTTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAA 280938 Query 25276 GGGCGCCAACCCG 25288 |||||| |||||| Sbjct 280939 GGGCGCAAACCCG 280951 >seq53 Length=2198565 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | |||||| || || | ||||| || |||||||| || || || ||||||||| Sbjct 1830912 TCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTG 1830853 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| || |||| | |||| ||||| | || ||||| || | ||||| Sbjct 1830852 TC-TTGAATTTTAGCTTTGACATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGAT 1830794 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||| || || ||||| |||||||| ||||| Sbjct 1830793 GGTTTTGCCTGTGAGTGTTTTAACGAAAATTTGCAT 1830758 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || | |||||| || || | ||||| || |||||||| || || || ||||||||| Sbjct 1830684 TCTTCCAACTGCTTTCCAGCAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTG 1830625 Query 133566 TCGGTGATCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| |||| | | | |||| ||||| | || || || || | |||| Sbjct 1830624 TCCTGGAT-TTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGAT 1830566 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || |||||||||||||| |||||||| Sbjct 1830565 GGTTTTTCCCGTAAGAGTTTTTACGAAGATCTGCAT 1830530 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| | || || || |||||||| || || || ||||||||||| ||| Sbjct 1831131 TGCTTTCCAGCGAAGATAAGACGTTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGGAT- 1831073 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| |||| | | | |||| ||||| | || || || || | |||| |||||| || Sbjct 1831072 TTTAGCTTTAACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAATGTGATGGTTTTTCC 1831013 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||||| || ||||| ||||| Sbjct 1831012 TGTCAGTGTTTTAACAAAAATTTGCAT 1830986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483376397799520