Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq401 226 7e-54 seq66 118 3e-21 >seq401 Length=384550 Score = 226 bits (250), Expect = 7e-54 Identities = 531/794 (67%), Gaps = 13/794 (2%) Strand=Plus/Minus Query 110370 CCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTT 110429 || ||||| ||||| | | || || |||||||| |||||| |||| || | |||| Sbjct 358539 CCACAACATATGTTAATGAGAGTGGCAATTGGTATACATGGAGATGACATAGATGCTGCC 358480 Query 110430 ATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTT 110489 || | || || | ||| | |||| | || |||||| | ||| || || || Sbjct 358479 ATCAAGACATACAATTTGTTATCTGAAAAATACTTTACTCATGCCAGTCCAACTCTTTTC 358420 Query 110490 AACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGAT 110549 |||| ||| | || || || ||||||| ||| | | | || | ||||| Sbjct 358419 TCAGCAGCAACACCTAGACCTCAGCTGTCTTCTTGTTTTTTAATTGCTATGAGAGATGAC 358360 Query 110550 TCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACT-CTGG 110608 |||||| ||||| |||||| | || || || | || | || || ||| || | || Sbjct 358359 AGTATTGAGGGTATCTATGATACCCTAAAGCAAGCAGCATTAATATC-AAAGTCTGCAGG 358301 Query 110609 AGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAA 110668 ||||||||| | || |||||| ||| | | || ||| || |||| || | | || Sbjct 358300 TGGAATTGGTCTACATGTTCATTGTATAAGAGCTAAGGGAACATATATTGCCGGAACAAA 358241 Query 110669 GGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGT 110728 || | ||||| ||| | || || |||||||| || | |||| | ||||||| |||||| Sbjct 358240 TGGAGTTTCAAATGGCTTAGTCCCTATGTTAAGGGTGTACAACAATACTGCAAGATATGT 358181 Query 110729 GAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTC 110785 ||||||| || ||| ||| || |||||||||| ||| | ||||| |||||| | Sbjct 358180 CGATCAAGGCGGAAATAAAAGACCAGGTGCATTTGCTATTTATTTAGAACCATGGCATGC 358121 Query 110786 AGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACG 110845 ||||| |||||||| ||||| || || ||| ||| |||||| | || | Sbjct 358120 TGATATTTTTGAATTTTTAGACCTAAAAAAGAATACAGGGAAAGAAGAAGTGCGTGCCAG 358061 Query 110846 TGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGG 110905 || | || ||||| | |||||| | |||||||||||||| | || || | || | Sbjct 358060 AGAGCTTTTCTATGCTCTTTGGATTCCTGATTTATTCATGAAGAGAGTAGAAAAGAACGA 358001 Query 110906 CATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGA 110965 | ||| ||| ||||||||||| ||||||||| || |||| | ||| |||| Sbjct 358000 AAATTGGAGTCTCATGTGTCCTCACAATTCTCCTGGCCTCGCTGACTGCTGGGGAGAAGA 357941 Query 110966 GTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGC 111025 ||||| | | || ||| |||||||| |||| |||| | |||||| ||| || Sbjct 357940 ATTTGAGAAGTTGTATGAACAATATGAACAAGAGAAGAAGTATGTTAAACAAGTTCGTGC 357881 Query 111026 TCAAGAACTTTGGTTCAAA---ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATAT 111082 | || ||| | ||| || |||| ||||||| || |||||||| || | ||| Sbjct 357880 ---ACAAATTTTATGGAAAGCTATAATTGAGGCACAAGTAGAGACTGGAACACCATTTAT 357824 Query 111083 TTTGTATAAAGA-TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGT 111141 |||||||||| |||| ||| | ||| |||||| || | || |||||||| | Sbjct 357823 GCTGTATAAAGACTCAT-GTAACAGAAAAAGCAATCAACAAAACCTTGGCACAATTAAAT 357765 Query 111142 CTAGTAATTTGTGC 111155 ||| ||| | ||| Sbjct 357764 GTAGCAATCTCTGC 357751 >seq66 Length=1166317 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 |||||| |||| ||||| |||| | || |||||||| || |||| || |||||| | Sbjct 967995 CATTTGCGTGACGATGATCTGGTTATATTTAATAGGCAGCCGACACTTCACAAAATGAGT 967936 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCT 305428 ||||||| ||| | ||| || || ||| | | | ||||| || | ||| | ||| Sbjct 967935 ATGATGGGTCACAGAGTTAAGGTCTTACCATGGTCAACATTCCGTATGAATTTGAGTTGC 967876 Query 305429 TGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 | |||| || || || ||||||||||| |||||||||||| |||||||||| || ||| Sbjct 967875 ACTTCGCCATACAACGCCGATTTTGATGGTGATGAAATGAATTTGCATGTACCGCAGTCA 967816 Query 305489 AAGGTTACAATGACTGAA 305506 | || ||| | ||||| Sbjct 967815 ATGGAGACACGGGCTGAA 967798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186701066025428