Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq53 120 7e-22 >seq53 Length=2198565 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| |||||||| ||||| ||||| | ||||||||| |||||||| | ||| Sbjct 1830773 AAAACACTCACAGGCAAAACCATCACCCTAGAAGTGGAAGCCTCTGACACCATTGAAAAT 1830832 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| || ||||| ||| || ||| ||| | || ||||| Sbjct 1830833 GTCAAAGCTAAA-ATTCAAGACAAGGAAGGTATTCCACCAGACCAGCAACGTCTCATCTT 1830891 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||||||||||||||| | || | | || |||||| | || || || || Sbjct 1830892 TGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAGACTACAACATTCAAAAGGAATC 1830951 Query 206364 TACTCTTCACCTTGTTTT 206381 || ||||| ||||| || Sbjct 1830952 AACACTTCATCTTGTGTT 1830969 Score = 114 bits (126), Expect = 3e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||||||||| ||||| ||||| || ||| ||| ||||| | ||| Sbjct 1831001 AAAACACTGACAGGAAAAACCATCACATTGGAGGTTGAACCTTCAGACACCATTGAAAAT 1831060 Query 206245 G-TAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 | |||||| ||| || ||||| || ||||| ||| || ||| ||| | |||||||| Sbjct 1831061 GTTAAAGCTAAA-ATCCAAGACAAGGAAGGTATTCCACCTGACCAGCAACGTCTTATCTT 1831119 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| |||||||| ||||||||||| | || || | || |||||| | || || || || Sbjct 1831120 CGCTGGAAAGCAATTGGAAGATGGCCGAACGCTGTCAGACTACAACATTCAAAAGGAATC 1831179 Query 206364 TACTCTTCACCTTGT 206378 || | || ||||| Sbjct 1831180 AACCTTGCATCTTGT 1831194 Score = 113 bits (124), Expect = 1e-19 Identities = 159/220 (72%), Gaps = 5/220 (2%) Strand=Plus/Plus Query 206163 TAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA 206222 ||||||| ||||| || ||||| || || |||||||| ||||| || ||||| || Sbjct 1830526 TAAAATG---CAGATCTTCGTAAAAACTCTTACGGGAAAAACCATCACATTAGAAGTTGA 1830582 Query 206223 AAGTTCTGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGC 206281 | ||| ||||| | ||| || ||||| ||| || || || || ||||| ||| | Sbjct 1830583 ACCTTCAGACACCATTGAAAATGTTAAAGCTAAA-ATCCAGGACAAGGAAGGTATTCCAC 1830641 Query 206282 CGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCG 206341 | ||| ||| | || ||||| || |||||||||||||||||||| | || | | | Sbjct 1830642 CAGACCAGCAACGTCTCATCTTTGCTGGAAAGCAGTTGGAAGATGGCCGCACCCTTTCAG 1830701 Query 206342 ATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTT 206381 | |||||| | || || ||||| || ||||| ||||| || Sbjct 1830702 ACTACAACATTCAAAAGGAGTCAACACTTCATCTTGTGTT 1830741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181709536003508