Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pieris_20rapae_20[genbank_20GCA_5F001856805.1_202016-10-16] 7,348 sequences; 245,871,251 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq326 159 3e-34 seq401 114 1e-20 seq53 96.9 3e-15 >seq326 Length=503882 Score = 159 bits (176), Expect = 3e-34 Identities = 396/594 (67%), Gaps = 14/594 (2%) Strand=Plus/Plus Query 24730 ATTGTTGCCGACACCGACGGTTCGCATCTTGCCCCGCTAGTATACGACTTTCTC-GAAAA 24788 |||||||||||||| || ||| ||| | | || |||| ||| ||| | ||||| Sbjct 280364 ATTGTTGCCGACACAGATGGTAGCCATTTACCACCCCTAGATTAC-ACTCTGGATGAAAA 280422 Query 24789 TAACAAGCGTTTCGAGAA-ACATCCCGATAAAATTGTAGCGGCTTACTTCGTCGAGTGGG 24847 | |||| ||| | | || || || || |||| | |||||||| || || |||| Sbjct 280423 ACATAAGCCATTCAAACAGACGTCTGGA-AAGGTTGTTGGTGCTTACTTTGTTGAATGGG 280481 Query 24848 GCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGCCCAATTTGTCGCACTTGC 24907 | || |||| | ||| | |||| ||| | || || ||||| | || | Sbjct 280482 GAGTTTATCCTAGAAAGTATCCCGTGGACCGTATACCAATCCCGAATTTAACTCATCTTT 280541 Query 24908 TATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACGACGCTCTCAAAACAGTTC 24967 | |||| ||| | ||||| || || || || || || |||||| | | ||| | || Sbjct 280542 TGTACGGTTTTATCCCGATTTGTGGTGGTGATGGAATCAACGACAGTTTGAAAGAAATTG 280601 Query 24968 CCGGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCGACGATTTTAAGGTAACCA 25027 || ||||| | ||| | ||| | || ||| || || || || ||||| ||| ||| Sbjct 280602 AGGGAAGTTTCCAAGCGTTACAGAGATCTTGCAGTGGCCGAGAAGACTTTAAAGTATCCA 280661 Query 25028 TTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGCGTCTCCACTTGGAACGAGC 25087 |||||||||||||||| ||| | || ||||| || ||||| | || | ||||| || | Sbjct 280662 TTCACGACCCCTGGGCTGCCTTACAAAAACCACAAAAAGGACTTTCTTCCTGGAATGAAC 280721 Query 25088 CGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAAATTAGCTAATCCACACTTGAAGG 25147 | ||||||||||||||||| || || ||| | ||| ||| | || | | ||| Sbjct 280722 CATACAAAGGCAACTTTGGCCAGTTGATGTCTTTAAAACAAGCAAGACCTGATCTAAAGA 280781 Query 25148 TGCTGGCGTCGATCGGCGGCTGGACCTTGTCAGATCCATTCTTTCACATGCATGACGCG- 25206 | || | || || ||||| |||||| | | ||||||||||| | | ||||| | Sbjct 280782 TTCTTCCTTCTATTGGCGGTTGGACCCTCGCTGATCCATTCTTCTTCTTCGATGACAAGG 280841 Query 25207 ---ACCGTGCGTCAAACG-TTCATCGATTCCGTCGAGGACTTTCTCTTGACTTGGAAGTT 25262 | | ||| || ||||| || || || | ||||| || || ||||| || Sbjct 280842 TAAAGAGAGCG-----CGTTTCATTGACTCTGTAAAAGACTTCCTTCAAACCTGGAAATT 280896 Query 25263 TTTCGACGGCGTCGACATTGACTGGGAGTTTCCGGGCGGCAAAGGGGCCAATCC 25316 |||||| || || ||||| |||||||| || || || || || || || || || Sbjct 280897 TTTCGATGGTGTAGACATAGACTGGGAATTCCCTGGAGGTAAGGGCGCAAACCC 280950 >seq401 Length=384550 Score = 114 bits (126), Expect = 1e-20 Identities = 675/1068 (63%), Gaps = 25/1068 (2%) Strand=Plus/Plus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || ||||||||||||||||||||||| || ||||| || || | ||| | ||| Sbjct 356804 GCAGCTGGTTTTGTGCGCAAATAATACATTCCAGTTTTAAGCCCCATTTTCCATGCATGA 356863 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 ||||| || |||| | | || | || || || || || |||||| || ||| Sbjct 356864 AAATGAATAGATGTCAATTTTCCATAATTTGGTTCAGCAACATGAATATTAAAAGACTGG 356923 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCT-TCAT 146750 |||||||| || || ||| | || || ||||| | ||| | |||||| || || Sbjct 356924 CTTTGATCAATAAATGCGCCCCTATCAGCTGCCATTTGGATCGT-CGTTTTAACTGAAAT 356982 Query 146751 TTCCCAAGCGGTTTTGTA-CAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAA 146809 |||||| | |||||||| || | | || || | |||||| | ||| || ||||||| Sbjct 356983 TTCCCAGACTGTTTTGTATAAGTCTCGTATTTCT-TTTGGAATTCTTTCGATATTTTGAA 357041 Query 146810 TAGAGCCCTTGTGCGCAAAAATA--GTGTTTCGTAT-TTCGGGCGTGTAAAGGTTTAGTT 146866 | || || |||| || ||| || |||| | | ||| | | || | | || Sbjct 357042 TTGAACCATTGTTATGAATGATAAGGTTTTTCATGTCTTCATCC---CATAGATCTGCTT 357098 Query 146867 TAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTC 146926 | | || | | | || || || || |||||||| || || | || || | || Sbjct 357099 GCGTTAAATCTTTCAAAAGATGATGGTTCACTACTTGAAATTCTCCTGACAAAACTCTTC 357158 Query 146927 TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCG 146986 | |||| | || || ||||| ||||| || |||||||| || | ||||| || | Sbjct 357159 TCTGATATATGTTTGATGTAAAAGGTTCAAAGGATTCATTATTTCCAAGAATTTGTGCTG 357218 Query 146987 TGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGT 147046 ||| |||||||||||| ||| | | ||| || || || || |||| | || | Sbjct 357219 TGGATGCGGTAGGCATAGGCGCTAAAAGCAAAGAGTTACGAAGCCCGTGTTTAGAAATTT 357278 Query 147047 TGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACT 147106 | || || | || ||| | ||| | || || | |||||||| || || | Sbjct 357279 TCTCTTTTAGAGCAACCCAATTCCAAAGGTCCGTAGGTATTTTATTCCACATATCATATT 357338 Query 147107 GGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG 147166 | | | || |||| | || || || ||| |||| || || | | Sbjct 357339 GCAAAATACCATTACTGACAGGGCTATTTTTAAAGGTACTGTATACACCTTCTTTTTCTG 357398 Query 147167 CCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTA 147226 | |||||||||||||| || | |||||||| || || || || ||||||| |||| Sbjct 357399 CTAATTCACAGCTTGCTTCTAAGGCTCCATAATAAATAGTCTCAAATATTTGTTGATTTA 357458 Query 147227 GGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAAC 147286 | || | ||| || || || || ||||| | || || | ||| ||||||| Sbjct 357459 ATTTAATTGCATTTTCACTTTCATATGGATAACGCATTAAAACGAATGTATCAGCCAAAC 357518 Query 147287 CCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCT--CGCTAT 147344 | || | ||| | || || |||| || | || | || || ||| | | Sbjct 357519 CTTGAACACCAATCCCAATTGGTC--TGTGTCTCATGTTTGAATTTTTAGCTTCTGGAAC 357576 Query 147345 GGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTA-TTG 147403 ||||||| || ||||||||| ||||| | || | | |||||| | || Sbjct 357577 TGGATAGTAATTCACATCAATAATTTTGTTTAAATTTTGGGTAATTGTTTTAGTGACTTC 357636 Query 147404 TTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTC---GACACGTACGCATTGGTTCACGG 147460 ||| | ||| || |||| ||||| |||||| ||| | ||| ||| | | Sbjct 357637 CTTTAACTTT-TCAAAATTGTAAGTTTTGTCTTCATTGAC----AAACAT--GTTGAGAG 357689 Query 147461 CGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGG 147520 | || || || | ||| ||||| ||| || || | | |||| | || ||||| | Sbjct 357690 CTATTGATGCTAAATTACAGACAGCCACTTCATCTTCCGAGGTGTATTCTACAATTTCTG 357749 Query 147521 CGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACG 147580 ||| || ||||| ||||| || || | ||||| ||||||||||| | || || | Sbjct 357750 TGCAGAGATTGCTACATTTAATTGTGCCAAGGTTTTGTTGATTGCTTTTTCTGTTACATG 357809 Query 147581 CGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAA 147628 |||||| | ||||| | ||| || ||||| ||||| | |||| Sbjct 357810 AGTCTTTATACAGCATAAATGGTGTTCCAGTCTCTACTTGTGCCTCAA 357857 >seq53 Length=2198565 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||||||||||||||| | ||| || |||||| | ||| || || | Sbjct 1830725 TTGACTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAG 1830666 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| ||||| || || ||||| || || ||||| || || ||||| ||| | Sbjct 1830665 CAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCCTGGATTTTAGCTTTAA 1830606 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || || | || || ||||| | || | ||||| || || ||||||| Sbjct 1830605 CATTTTCAATGGTGTCTGAAGGTTCAACTTCTAATGTGATGGTTTTTCCCGTAAGAGTTT 1830546 Query 132108 TTATGAAAATCTGCAT 132123 ||| ||| |||||||| Sbjct 1830545 TTACGAAGATCTGCAT 1830530 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || ||||||||||||||||| | ||| || |||||| | ||| || || | Sbjct 1830953 TTGATTCCTTTTGAATGTTGTAGTCTGAAAGGGTGCGGCCATCTTCCAACTGCTTTCCAG 1830894 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| ||||| || || ||||| || || ||||| || || |||||| ||| | Sbjct 1830893 CAAAGATGAGACGTTGCTGGTCTGGTGGAATACCTTCCTTGTCTTGAATTTTAGCTTTGA 1830834 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || || | | |||||||| | || | ||||| || || || |||| Sbjct 1830833 CATTTTCAATGGTGTCAGAGGCTTCCACTTCTAGGGTGATGGTTTTGCCTGTGAGTGTTT 1830774 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 1830773 TAACGAAAATTTGCAT 1830758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476567423261280